Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G111700.1 | Wheat | cytosol, golgi, nucleus | 98.72 | 98.72 |
| Os11t0168100-01 | Rice | plasma membrane | 88.09 | 88.09 |
| EES08039 | Sorghum | cytosol, golgi, nucleus | 86.38 | 86.38 |
| HORVU4Hr1G019940.1 | Barley | cytosol | 92.34 | 83.46 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 70.21 | 70.51 |
| GSMUA_Achr6P18060_001 | Banana | cytosol | 71.06 | 67.07 |
| TraesCS3A01G508700.1 | Wheat | cytosol, golgi, peroxisome | 63.4 | 66.82 |
| Solyc12g089150.1.1 | Tomato | cytosol | 33.62 | 61.24 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 65.53 | 60.39 |
| KRH73753 | Soybean | cytosol, golgi, nucleus | 62.13 | 60.33 |
| KRH14393 | Soybean | cytosol, golgi, nucleus | 62.13 | 60.33 |
| GSMUA_Achr10P... | Banana | cytosol | 41.7 | 58.33 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 60.43 | 57.96 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 60.43 | 57.96 |
| PGSC0003DMT400039964 | Potato | nucleus | 60.85 | 57.89 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 60.0 | 57.55 |
| KRG98757 | Soybean | cytosol, golgi, nucleus | 60.0 | 57.32 |
| KRH46186 | Soybean | cytosol, golgi, nucleus | 60.0 | 57.32 |
| CDY30816 | Canola | nucleus | 59.57 | 57.14 |
| CDX94628 | Canola | cytosol, golgi, nucleus | 59.57 | 57.14 |
| AT1G28490.1 | Thale cress | nucleus | 59.57 | 57.14 |
| Bra010866.1-P | Field mustard | cytosol | 59.15 | 56.73 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 66.81 | 53.95 |
| KRH33360 | Soybean | nucleus | 28.51 | 50.0 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 10.64 | 48.08 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 57.87 | 30.84 |
| CDY35752 | Canola | nucleus | 53.19 | 29.27 |
| KRH25827 | Soybean | nucleus | 23.4 | 27.23 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.90 | MapMan:22.7.4.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0048193 | InterPro:IPR000727 | PFAM:PF05739 |
| PFAM:PF09177 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF150 | SMART:SM00397 | InterPro:SNARE |
| SUPFAM:SSF47661 | SUPFAM:SSF58038 | InterPro:Syntaxin-6_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS4A01G208100 |
| EnsemblPlants:TraesCS4A01G208100.1 | TIGR:cd15841 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:-:501138148..501140321
Molecular Weight (calculated)
26673.0 Da
IEP (calculated)
4.900
GRAVY (calculated)
-0.290
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPAQDPFYI VKDEIQDSID KVQDTFNQWK QAPENTGEYV HLTRELLTTC ESVQWQVDEL EKAISVAERD PAYYGLNEVE IGKRRNWTST ARNQVVAIRR
101: NVEAGKHKTA FGRSVNPSEL GRSKQHIAQD NDDFIASESD QQMLLMKRQD DELDALSASV QRIGGVGLTI HEELVGQEKL LGELSLDMET TSNRLDFVQK
201: RVAMVLKKAS LKGQIMMIAF LVVLFIILFV LVFLT
101: NVEAGKHKTA FGRSVNPSEL GRSKQHIAQD NDDFIASESD QQMLLMKRQD DELDALSASV QRIGGVGLTI HEELVGQEKL LGELSLDMET TSNRLDFVQK
201: RVAMVLKKAS LKGQIMMIAF LVVLFIILFV LVFLT
001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
Arabidopsis Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.