Factsheet for GSMUA_Achr6P25690_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P08270_001
GSMUA_Achr4P15460_001
GSMUA_Achr6P14800_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	GSMUA_Achr4P08270_001	AT3G16310.1	21798944
AT1G28490.1	GSMUA_Achr4P15460_001	AT3G16310.1	21798944
AT1G28490.1	GSMUA_Achr6P14800_001	AT3G16310.1	21798944
AT1G28490.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT1G28490.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT1G28490.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P18060_001	Banana	cytosol	70.59	72.29
Solyc12g089150.1.1	Tomato	cytosol	34.9	68.99
EES04275	Sorghum	cytosol	62.35	68.53
TraesCS3B01G577200.1	Wheat	cytosol	61.57	67.09
TraesCS3D01G516200.1	Wheat	cytosol	61.57	67.09
HORVU3Hr1G111910.1	Barley	cytosol	61.57	66.81
Os01t0963300-01	Rice	plasma membrane	61.18	66.67
TraesCS3A01G508800.1	Wheat	cytosol	61.18	66.67
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	60.78	65.96
EES08039	Sorghum	cytosol, golgi, nucleus	60.78	65.96
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	60.39	65.53
Os11t0168100-01	Rice	plasma membrane	60.39	65.53
KRH73753	Soybean	cytosol, golgi, nucleus	61.57	64.88
CDY34096	Canola	cytosol, golgi, nucleus	61.96	64.49
CDY15661	Canola	cytosol, golgi, nucleus	61.96	64.49
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	61.96	64.49
KRH14393	Soybean	cytosol, golgi, nucleus	61.18	64.46
GSMUA_Achr10P...	Banana	cytosol	42.35	64.29
PGSC0003DMT400039964	Potato	nucleus	61.96	63.97
CDY30816	Canola	nucleus	61.18	63.67
CDX94628	Canola	cytosol, golgi, nucleus	61.18	63.67
Bra010866.1-P	Field mustard	cytosol	60.78	63.27
AT1G28490.1	Thale cress	nucleus	60.39	62.86
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	54.9	62.78
KRH46186	Soybean	cytosol, golgi, nucleus	60.39	62.6
Zm00001d048147_P002	Maize	cytosol	61.57	62.3
KRG98757	Soybean	cytosol, golgi, nucleus	60.0	62.2
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	61.96	59.4
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	63.53	55.67
HORVU4Hr1G019940.1	Barley	cytosol	56.47	55.38
KRH33360	Soybean	nucleus	29.02	55.22
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.98	53.85
CDX90156	Canola	cytosol, nucleus, plasma membrane	60.39	34.92
CDY35752	Canola	nucleus	56.08	33.49
KRH25827	Soybean	nucleus	22.75	28.71

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	ncoils:Coil	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSMUA_Achr6G25690_001
EnsemblPlants:GSMUA_Achr6P25690_001	EnsemblPlants:GSMUA_Achr6T25690_001	InterPro:IPR000727	UniProt:M0TA65	PFAM:PF05739	PFAM:PF09177
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002969665	SEG:seg

Description

Syntaxin-61 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25690_001]

Coordinates

chr6:-:26734812..26739991

Molecular Weight (calculated)

28693.5 Da

IEP (calculated)

4.765

GRAVY (calculated)

-0.213

Length

255 amino acids

Sequence
(BLAST)

001: MTPARDPFYI VKEEIQGSID KLQASFRQWE QTSLDIGERV RLTKELLASC ESLDWQVDEL DKAIAVAAKD PARYSLDETE LGKRRKWTSI ARKQACICFF
101: VGTIRRTLEE SGVKGSSVTP SLNGVRQELM RLPNDYASKT GRSGYNTSQD DDDFISSESD RQLLLIKQQD EELDELSASV ERIGGIGLTI HDELVGQERI
201: LGDLSLEMDT TSNRLDFVQK KVAVVMKKAG AKGQIMMIGF LIVLFIILFV LVFFT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.