CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES02290
EES05123
EES14314
EES19830
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	EES05123	AT1G27300.1	21798944
AT1G28490.1	EES02290	AT3G16310.1	21798944
AT1G28490.1	EES19830	AT3G16310.1	21798944
AT1G28490.1	EER96942	AT4G26455.1	21798944
AT1G28490.1	EES14314	AT4G26455.1	21798944
AT1G28490.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G516200.1	Wheat	cytosol	89.66	88.89
Zm00001d048147_P002	Maize	cytosol	96.12	88.49
Os01t0963300-01	Rice	plasma membrane	89.22	88.46
TraesCS3A01G508800.1	Wheat	cytosol	89.22	88.46
TraesCS3B01G577200.1	Wheat	cytosol	88.79	88.03
HORVU3Hr1G111910.1	Barley	cytosol	88.79	87.66
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	96.98	84.59
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	79.31	82.51
EES08039	Sorghum	cytosol, golgi, nucleus	69.83	68.94
GSMUA_Achr6P18060_001	Banana	cytosol	71.98	67.07
Solyc12g089150.1.1	Tomato	cytosol	36.21	65.12
PGSC0003DMT400039964	Potato	nucleus	68.97	64.78
KRH14393	Soybean	cytosol, golgi, nucleus	65.95	63.22
CDY34096	Canola	cytosol, golgi, nucleus	66.38	62.86
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	66.38	62.86
KRH46186	Soybean	cytosol, golgi, nucleus	66.38	62.6
CDY30816	Canola	nucleus	65.95	62.45
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	68.53	62.35
Bra010866.1-P	Field mustard	cytosol	65.52	62.04
CDY15661	Canola	cytosol, golgi, nucleus	65.52	62.04
CDX94628	Canola	cytosol, golgi, nucleus	65.52	62.04
KRG98757	Soybean	cytosol, golgi, nucleus	65.52	61.79
KRH73753	Soybean	cytosol, golgi, nucleus	64.22	61.57
AT1G28490.1	Thale cress	nucleus	64.22	60.82
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	71.12	56.7
GSMUA_Achr10P...	Banana	cytosol	37.93	52.38
KRH33360	Soybean	nucleus	29.31	50.75
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.78	48.08
CDX90156	Canola	cytosol, nucleus, plasma membrane	64.22	33.79
CDY35752	Canola	nucleus	59.48	32.32
KRH25827	Soybean	nucleus	23.71	27.23

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	EntrezGene:8077409	UniProt:C5XIP8	ncoils:Coil
EnsemblPlants:EES04275	ProteinID:EES04275	ProteinID:EES04275.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193
GO:GO:0048278	InterPro:IPR000727	PFAM:PF05739	PFAM:PF09177	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	EnsemblPlantsGene:SORBI_3003G437500	SUPFAM:SSF47661	SUPFAM:SSF58038
unigene:Sbi.12215	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001A85816	RefSeq:XP_002459155.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:73793962..73797190

Molecular Weight (calculated)

26509.3 Da

IEP (calculated)

4.739

GRAVY (calculated)

-0.437

Length

232 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VREEIQDSID KLQSTFHRWE QTASNTGEYV HLTKELLTSC ESIEWQVDEL EKTISVASRD PAYYGLDEVE LSRRRNWTGS ARKQVGTVKR
101: AIEKGKSNAA TSKYQDTSRT NHYSAQDNDD FISSESDRQL LLMRQQDEEL DELSESVQRI GGVGLTIHEE LSGQERILND LSLEMETTSN RLDFVQKRVA
201: MVMKKAGIKG QIMLIAFLVV LFIILFVSVF LT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.