Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94628 | Canola | cytosol, golgi, nucleus | 92.24 | 92.24 |
| Bra010866.1-P | Field mustard | cytosol | 92.24 | 92.24 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 91.43 | 91.43 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 91.02 | 91.02 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 91.02 | 91.02 |
| CDY30816 | Canola | nucleus | 90.2 | 90.2 |
| Solyc12g089150.1.1 | Tomato | cytosol | 37.96 | 72.09 |
| PGSC0003DMT400039964 | Potato | nucleus | 69.8 | 69.23 |
| KRH46186 | Soybean | cytosol, golgi, nucleus | 68.57 | 68.29 |
| KRG98757 | Soybean | cytosol, golgi, nucleus | 68.57 | 68.29 |
| KRH73753 | Soybean | cytosol, golgi, nucleus | 66.53 | 67.36 |
| KRH14393 | Soybean | cytosol, golgi, nucleus | 66.12 | 66.94 |
| EES04275 | Sorghum | cytosol | 60.82 | 64.22 |
| Os01t0963300-01 | Rice | plasma membrane | 60.82 | 63.68 |
| TraesCS3B01G577200.1 | Wheat | cytosol | 60.0 | 62.82 |
| TraesCS3D01G516200.1 | Wheat | cytosol | 59.59 | 62.39 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 59.59 | 62.39 |
| Os11t0168100-01 | Rice | plasma membrane | 59.59 | 62.13 |
| GSMUA_Achr6P18060_001 | Banana | cytosol | 62.86 | 61.85 |
| HORVU3Hr1G111910.1 | Barley | cytosol | 59.18 | 61.7 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 73.06 | 61.51 |
| EES08039 | Sorghum | cytosol, golgi, nucleus | 57.96 | 60.43 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 62.86 | 60.39 |
| TraesCS4A01G208100.1 | Wheat | cytosol, golgi, nucleus | 57.14 | 59.57 |
| TraesCS4B01G111700.1 | Wheat | cytosol, golgi, nucleus | 57.14 | 59.57 |
| Zm00001d048147_P002 | Maize | cytosol | 59.59 | 57.94 |
| TraesCS3A01G508700.1 | Wheat | cytosol, golgi, peroxisome | 51.02 | 56.05 |
| Zm00001d042018_P003 | Maize | cytosol, golgi, nucleus | 60.41 | 55.64 |
| KRH33360 | Soybean | nucleus | 30.2 | 55.22 |
| GSMUA_Achr10P... | Banana | cytosol | 37.14 | 54.17 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 91.02 | 50.57 |
| HORVU4Hr1G019940.1 | Barley | cytosol | 53.06 | 50.0 |
| CDY35752 | Canola | nucleus | 85.31 | 48.95 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 9.39 | 44.23 |
| KRH25827 | Soybean | nucleus | 22.04 | 26.73 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.90 | MapMan:22.7.4.2 | EntrezGene:839749 | UniProt:A0A178W5S5 | ProteinID:AAF16768.1 |
| ProteinID:AEE30982.1 | EMBL:AF355754 | ArrayExpress:AT1G28490 | EnsemblPlantsGene:AT1G28490 | RefSeq:AT1G28490 | TAIR:AT1G28490 |
| RefSeq:AT1G28490-TAIR-G | EnsemblPlants:AT1G28490.1 | TAIR:AT1G28490.1 | EMBL:AY072115 | EMBL:AY150420 | Unigene:At.11842 |
| ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 |
| GO:GO:0005802 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009738 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0031902 | GO:GO:0048193 |
| GO:GO:0048278 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_564310.1 | ProteinID:OAP12835.1 | PFAM:PF05739 |
| PFAM:PF09177 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF150 | UniProt:Q946Y7 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 |
| SUPFAM:SSF58038 | Symbol:SYP61 | InterPro:Syntaxin-6_N | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI00001362E8 | SEG:seg | : | : | : | : |
Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
Coordinates
chr1:+:10015856..10018047
Molecular Weight (calculated)
27723.2 Da
IEP (calculated)
4.869
GRAVY (calculated)
-0.390
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.