Factsheet for PGSC0003DMT400039964

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400050482
PGSC0003DMT400056956
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G28490.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G28490.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G28490.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT1G28490.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G28490.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089150.1.1	Tomato	cytosol	51.42	98.45
KRG98757	Soybean	cytosol, golgi, nucleus	70.85	71.14
KRH46186	Soybean	cytosol, golgi, nucleus	70.45	70.73
KRH73753	Soybean	cytosol, golgi, nucleus	68.42	69.83
KRH14393	Soybean	cytosol, golgi, nucleus	68.42	69.83
Bra010866.1-P	Field mustard	cytosol	69.23	69.8
AT1G28490.1	Thale cress	nucleus	69.23	69.8
CDY15661	Canola	cytosol, golgi, nucleus	68.83	69.39
CDY34096	Canola	cytosol, golgi, nucleus	68.42	68.98
CDY30816	Canola	nucleus	68.42	68.98
CDX94628	Canola	cytosol, golgi, nucleus	68.42	68.98
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	68.42	68.98
EES04275	Sorghum	cytosol	64.78	68.97
GSMUA_Achr6P18060_001	Banana	cytosol	67.21	66.67
TraesCS3D01G516200.1	Wheat	cytosol	62.35	65.81
TraesCS3B01G577200.1	Wheat	cytosol	62.35	65.81
Os01t0963300-01	Rice	plasma membrane	62.35	65.81
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	77.33	65.64
HORVU3Hr1G111910.1	Barley	cytosol	62.35	65.53
TraesCS3A01G508800.1	Wheat	cytosol	61.94	65.38
Zm00001d048147_P002	Maize	cytosol	64.37	63.1
Os11t0168100-01	Rice	plasma membrane	59.92	62.98
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	63.97	61.96
EES08039	Sorghum	cytosol, golgi, nucleus	58.3	61.28
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	57.89	60.85
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	57.89	60.85
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	65.18	60.53
KRH33360	Soybean	nucleus	32.79	60.45
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	53.85	59.64
GSMUA_Achr10P...	Banana	cytosol	38.87	57.14
HORVU4Hr1G019940.1	Barley	cytosol	54.66	51.92
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.93	51.92
CDX90156	Canola	cytosol, nucleus, plasma membrane	68.02	38.1
CDY35752	Canola	nucleus	63.16	36.53
KRH25827	Soybean	nucleus	23.89	29.21

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	EntrezGene:102593749	MapMan:22.7.4.2	ncoils:Coil	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193
InterPro:IPR000727	UniProt:M1B923	PFAM:PF05739	PFAM:PF09177	EnsemblPlantsGene:PGSC0003DMG400015457	PGSC:PGSC0003DMG400015457
EnsemblPlants:PGSC0003DMT400039964	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE
SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002960B20
RefSeq:XP_006342585.1	RefSeq:XP_006342586.1	SEG:seg	:	:	:

Description

Syntaxin-61 [Source:PGSC_GENE;Acc:PGSC0003DMG400015457]

Coordinates

chr12:-:56867746..56873619

Molecular Weight (calculated)

28055.4 Da

IEP (calculated)

4.622

GRAVY (calculated)

-0.367

Length

247 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VKEEIQESID KLLSTFHQWE QTSAGSSEQV HLTKELLASS ESIEWQVDEL DKTIDVAARD PSWYGINDIE LDKRRRWTSN ARAQVGSMKK
101: AVVAGKQSNG TSTSNLSGMR RELLRLPDSD QKERSNAYNA RDNDDFISSE SDRQLLLMRQ QDEELDELSA SVVRIGDVGL TIHDELLAHE KILSELDTEM
201: DSTSNRLDFV QKKIGMVMKK ASVKGQMMMI CFLIVLFIVL FVLVFLT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.