Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G516200.1 | Wheat | cytosol | 93.72 | 89.32 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 93.27 | 88.89 |
| TraesCS3B01G577200.1 | Wheat | cytosol | 92.83 | 88.46 |
| HORVU3Hr1G111910.1 | Barley | cytosol | 91.03 | 86.38 |
| EES04275 | Sorghum | cytosol | 82.51 | 79.31 |
| Os01t0963300-01 | Rice | plasma membrane | 81.61 | 77.78 |
| Zm00001d048147_P002 | Maize | cytosol | 80.27 | 71.03 |
| Zm00001d042018_P003 | Maize | cytosol, golgi, nucleus | 81.61 | 68.42 |
| TraesCS4A01G208100.1 | Wheat | cytosol, golgi, nucleus | 66.82 | 63.4 |
| Solyc12g089150.1.1 | Tomato | cytosol | 35.43 | 61.24 |
| GSMUA_Achr6P18060_001 | Banana | cytosol | 65.47 | 58.63 |
| KRH14393 | Soybean | cytosol, golgi, nucleus | 59.64 | 54.96 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 62.78 | 54.9 |
| PGSC0003DMT400039964 | Potato | nucleus | 59.64 | 53.85 |
| KRH73753 | Soybean | cytosol, golgi, nucleus | 57.85 | 53.31 |
| Bra010866.1-P | Field mustard | cytosol | 57.85 | 52.65 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 57.85 | 52.65 |
| CDY30816 | Canola | nucleus | 57.85 | 52.65 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 57.85 | 52.65 |
| KRH46186 | Soybean | cytosol, golgi, nucleus | 57.85 | 52.44 |
| KRG98757 | Soybean | cytosol, golgi, nucleus | 57.4 | 52.03 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 56.95 | 51.84 |
| CDX94628 | Canola | cytosol, golgi, nucleus | 56.95 | 51.84 |
| AT1G28490.1 | Thale cress | nucleus | 56.05 | 51.02 |
| GSMUA_Achr10P... | Banana | cytosol | 36.77 | 48.81 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 63.68 | 48.8 |
| KRH33360 | Soybean | nucleus | 21.52 | 35.82 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 56.5 | 28.57 |
| CDY35752 | Canola | nucleus | 51.12 | 26.7 |
| KRH25827 | Soybean | nucleus | 23.32 | 25.74 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 5.38 | 23.08 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.90 | MapMan:22.7.4.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0048193 | InterPro:IPR000727 | PFAM:PF05739 |
| PFAM:PF09177 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF150 | SMART:SM00397 | InterPro:SNARE |
| SUPFAM:SSF47661 | SUPFAM:SSF58038 | InterPro:Syntaxin-6_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS3A01G508700 |
| EnsemblPlants:TraesCS3A01G508700.1 | TIGR:cd15841 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr3A:-:729754464..729756486
Molecular Weight (calculated)
25467.3 Da
IEP (calculated)
4.602
GRAVY (calculated)
-0.352
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGQWDEIGK LQTTFHWWGQ VSSNTGEYVQ LTKELLTSCE SIEWQVDELE KTISVASRDP AYYVLDEVEL SRRQNWTGSA RNQIGTVKRA VEKGKSNPAM
101: ARHQDNGTSR TNYYSSQDND DYIASESDRE LLLMRQQDDE LDELSANVQR IGGVGLTIHE ELCGQERILN NLSLEMETTS NRLDIVQKRV AMVMKKAGIK
201: GQIMLILFLV VLFIILFVLV FLT
101: ARHQDNGTSR TNYYSSQDND DYIASESDRE LLLMRQQDDE LDELSANVQR IGGVGLTIHE ELCGQERILN NLSLEMETTS NRLDIVQKRV AMVMKKAGIK
201: GQIMLILFLV VLFIILFVLV FLT
001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
Arabidopsis Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.