Factsheet for Zm00001d048147_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d016570_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d038803_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT1G28490.1	Zm00001d050563_P001	AT1G27300.1	21798944
AT1G28490.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT1G28490.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT1G28490.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT1G28490.1	Zm00001d003334_P001	AT4G26455.1	21798944
AT1G28490.1	Zm00001d005997_P002	AT4G26455.1	21798944
AT1G28490.1	Zm00001d020879_P001	AT4G26455.1	21798944
AT1G28490.1	Zm00001d025667_P001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04275	Sorghum	cytosol	88.49	96.12
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	91.67	86.84
TraesCS3D01G516200.1	Wheat	cytosol	80.56	86.75
TraesCS3B01G577200.1	Wheat	cytosol	80.16	86.32
TraesCS3A01G508800.1	Wheat	cytosol	80.16	86.32
Os01t0963300-01	Rice	plasma membrane	79.76	85.9
HORVU3Hr1G111910.1	Barley	cytosol	79.76	85.53
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	71.03	80.27
GSMUA_Achr6P18060_001	Banana	cytosol	65.08	65.86
Solyc12g089150.1.1	Tomato	cytosol	33.33	65.12
PGSC0003DMT400039964	Potato	nucleus	63.1	64.37
KRH14393	Soybean	cytosol, golgi, nucleus	59.92	62.4
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	59.92	61.63
CDY34096	Canola	cytosol, golgi, nucleus	59.92	61.63
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	62.3	61.57
CDY30816	Canola	nucleus	59.52	61.22
KRH46186	Soybean	cytosol, golgi, nucleus	59.52	60.98
Bra010866.1-P	Field mustard	cytosol	59.13	60.82
CDY15661	Canola	cytosol, golgi, nucleus	59.13	60.82
CDX94628	Canola	cytosol, golgi, nucleus	59.13	60.82
KRH73753	Soybean	cytosol, golgi, nucleus	58.33	60.74
KRG98757	Soybean	cytosol, golgi, nucleus	59.13	60.57
AT1G28490.1	Thale cress	nucleus	57.94	59.59
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	65.08	56.36
KRH33360	Soybean	nucleus	26.98	50.75
GSMUA_Achr10P...	Banana	cytosol	33.33	50.0
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	10.32	50.0
CDX90156	Canola	cytosol, nucleus, plasma membrane	57.94	33.11
CDY35752	Canola	nucleus	53.17	31.38
KRH25827	Soybean	nucleus	22.22	27.72

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	EntrezGene:103639462	MapMan:22.7.4.2	UniProt:A0A1D6PI21	ProteinID:AQL08974.1
ProteinID:AQL08975.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	InterPro:IPR000727	PFAM:PF05739	PFAM:PF09177
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0008446EB1	EnsemblPlantsGene:Zm00001d048147
EnsemblPlants:Zm00001d048147_P002	EnsemblPlants:Zm00001d048147_T002	SEG:seg	:	:	:

Description

Syntaxin-61

Coordinates

chr9:+:150853445..150862402

Molecular Weight (calculated)

28964.4 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.356

Length

252 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI VREEIQESID KLQSTFHRWE QTASNTGEYV HLTKELLISC ESIEWQVDEL EKTISVASRD PAYYGLDEVE LSRRRNWTGS SHKQLTMYLN
101: LLHGSSQFMH EHIQVGTVKR AIEKGKSNAA TSKYQDTSRT NHYSAQDNDD FLSSESDRQL LLMRQQDEEL DELSESVQRI GGVGLTIHEE LSGQERILND
201: LSLEMETTSN RLDFVQKRVA MVIKKAGIKG QIMLIVFLIV LFIILFVLVF LT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.