Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- vacuole 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46186 | Soybean | cytosol, golgi, nucleus | 97.56 | 97.56 |
| KRH14393 | Soybean | cytosol, golgi, nucleus | 80.89 | 82.23 |
| KRH73753 | Soybean | cytosol, golgi, nucleus | 78.46 | 79.75 |
| Solyc12g089150.1.1 | Tomato | cytosol | 38.62 | 73.64 |
| PGSC0003DMT400039964 | Potato | nucleus | 71.14 | 70.85 |
| KRH33360 | Soybean | nucleus | 37.4 | 68.66 |
| Bra010866.1-P | Field mustard | cytosol | 68.29 | 68.57 |
| AT1G28490.1 | Thale cress | nucleus | 68.29 | 68.57 |
| CDY15661 | Canola | cytosol, golgi, nucleus | 68.29 | 68.57 |
| Bra032912.1-P | Field mustard | cytosol, golgi, nucleus | 67.89 | 68.16 |
| CDX94628 | Canola | cytosol, golgi, nucleus | 67.89 | 68.16 |
| CDY34096 | Canola | cytosol, golgi, nucleus | 67.89 | 68.16 |
| GSMUA_Achr6P18060_001 | Banana | cytosol | 68.7 | 67.87 |
| CDY30816 | Canola | nucleus | 67.48 | 67.76 |
| EES04275 | Sorghum | cytosol | 61.79 | 65.52 |
| Os01t0963300-01 | Rice | plasma membrane | 60.98 | 64.1 |
| TraesCS3B01G577200.1 | Wheat | cytosol | 59.76 | 62.82 |
| EES08039 | Sorghum | cytosol, golgi, nucleus | 59.76 | 62.55 |
| Os11t0168100-01 | Rice | plasma membrane | 59.76 | 62.55 |
| TraesCS3D01G516200.1 | Wheat | cytosol | 59.35 | 62.39 |
| TraesCS3A01G508800.1 | Wheat | cytosol | 58.94 | 61.97 |
| VIT_05s0094g00860.t01 | Wine grape | endoplasmic reticulum, vacuole | 73.17 | 61.86 |
| HORVU3Hr1G111910.1 | Barley | cytosol | 58.54 | 61.28 |
| GSMUA_Achr10P... | Banana | cytosol | 41.46 | 60.71 |
| GSMUA_Achr6P25690_001 | Banana | cytosol, golgi, nucleus | 62.2 | 60.0 |
| TraesCS4A01G208100.1 | Wheat | cytosol, golgi, nucleus | 57.32 | 60.0 |
| TraesCS4B01G111700.1 | Wheat | cytosol, golgi, nucleus | 56.91 | 59.57 |
| Zm00001d048147_P002 | Maize | cytosol | 60.57 | 59.13 |
| TraesCS3A01G508700.1 | Wheat | cytosol, golgi, peroxisome | 52.03 | 57.4 |
| Zm00001d042018_P003 | Maize | cytosol, golgi, nucleus | 61.38 | 56.77 |
| HORVU4Hr1G019940.1 | Barley | cytosol | 54.88 | 51.92 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 9.76 | 46.15 |
| CDX90156 | Canola | cytosol, nucleus, plasma membrane | 67.89 | 37.87 |
| CDY35752 | Canola | nucleus | 63.41 | 36.53 |
| KRH25827 | Soybean | nucleus | 26.83 | 32.67 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.90 | EntrezGene:100790368 | MapMan:22.7.4.2 | EMBL:ACUP02010919 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_18G096200 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048193 | GO:GO:0048278 | UniProt:I1N0N7 |
| InterPro:IPR000727 | EnsemblPlants:KRG98757 | ProteinID:KRG98757 | ProteinID:KRG98757.1 | PFAM:PF05739 | PFAM:PF09177 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF150 | SMART:SM00397 | InterPro:SNARE | SUPFAM:SSF47661 |
| SUPFAM:SSF58038 | InterPro:Syntaxin-6_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0001BA4868 | SEG:seg |
Description
hypothetical protein
Coordinates
chr18:+:9860188..9864208
Molecular Weight (calculated)
27639.7 Da
IEP (calculated)
4.843
GRAVY (calculated)
-0.435
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSAQDPFYV VKAEIQDSID KLQSTFHQWE SKSGAAEQGH LTKEVLAGCE SIEWQVDELD KAIAIASRDP SWYGIDEAEV ESRRRWTSNT RSQVGTMKKA
101: VESGKGSSTT SHASVNGMRR ELMRLPNSHQ TDSSNQYAAR DNDDFILSES DRQTLLIKRQ DEELDELSES VRRIGGVGLT IHDELTAQEK ILDELGSEMD
201: STTNRLDFVQ KKVAMVMKKA SAKGQIMMIL GLLALFIFLF ILVFFT
101: VESGKGSSTT SHASVNGMRR ELMRLPNSHQ TDSSNQYAAR DNDDFILSES DRQTLLIKRQ DEELDELSES VRRIGGVGLT IHDELTAQEK ILDELGSEMD
201: STTNRLDFVQ KKVAMVMKKA SAKGQIMMIL GLLALFIFLF ILVFFT
001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT
Arabidopsis Description
SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.