CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH09922
KRH22653
KRH23409
KRH26664
KRH31520
KRH56393
KRH62532
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	KRG97393	AT1G27300.1	21798944
AT1G28490.1	KRH31520	AT1G27300.1	21798944
AT1G28490.1	KRH76090	AT1G27300.1	21798944
AT1G28490.1	KRH09922	AT3G16310.1	21798944
AT1G28490.1	KRH23409	AT3G16310.1	21798944
AT1G28490.1	KRH56393	AT4G26455.1	21798944
AT1G28490.1	KRH62532	AT4G26455.1	21798944
AT1G28490.1	KRH22653	AT5G22290.1	21798944
AT1G28490.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73753	Soybean	cytosol, golgi, nucleus	92.98	92.98
KRH33360	Soybean	nucleus	47.11	85.07
KRH46186	Soybean	cytosol, golgi, nucleus	82.23	80.89
KRG98757	Soybean	cytosol, golgi, nucleus	82.23	80.89
Solyc12g089150.1.1	Tomato	cytosol	38.02	71.32
PGSC0003DMT400039964	Potato	nucleus	69.83	68.42
GSMUA_Achr6P18060_001	Banana	cytosol	70.25	68.27
AT1G28490.1	Thale cress	nucleus	66.94	66.12
EES04275	Sorghum	cytosol	63.22	65.95
Bra032912.1-P	Field mustard	cytosol, golgi, nucleus	66.53	65.71
CDY34096	Canola	cytosol, golgi, nucleus	66.53	65.71
CDY15661	Canola	cytosol, golgi, nucleus	66.12	65.31
CDY30816	Canola	nucleus	66.12	65.31
Bra010866.1-P	Field mustard	cytosol	65.7	64.9
CDX94628	Canola	cytosol, golgi, nucleus	65.7	64.9
Os01t0963300-01	Rice	plasma membrane	62.4	64.53
TraesCS3D01G516200.1	Wheat	cytosol	61.98	64.1
TraesCS3B01G577200.1	Wheat	cytosol	61.98	64.1
TraesCS3A01G508800.1	Wheat	cytosol	61.57	63.68
Os11t0168100-01	Rice	plasma membrane	61.57	63.4
HORVU3Hr1G111910.1	Barley	cytosol	61.16	62.98
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	75.62	62.89
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	60.33	62.13
EES08039	Sorghum	cytosol, golgi, nucleus	59.92	61.7
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	59.92	61.7
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	64.46	61.18
GSMUA_Achr10P...	Banana	cytosol	42.15	60.71
Zm00001d048147_P002	Maize	cytosol	62.4	59.92
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	54.96	59.64
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	63.64	57.89
HORVU4Hr1G019940.1	Barley	cytosol	57.85	53.85
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	11.16	51.92
CDX90156	Canola	cytosol, nucleus, plasma membrane	65.29	35.83
KRH25827	Soybean	nucleus	28.93	34.65
CDY35752	Canola	nucleus	60.74	34.43

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	EntrezGene:100793612	MapMan:22.7.4.2	EMBL:ACUP02008501	ncoils:Coil
EnsemblPlantsGene:GLYMA_14G023200	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048193	GO:GO:0048278	UniProt:I1M6Q8
InterPro:IPR000727	EnsemblPlants:KRH14393	ProteinID:KRH14393	ProteinID:KRH14393.1	PFAM:PF05739	PFAM:PF09177
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF150	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000233B29B	SEG:seg

Description

hypothetical protein

Coordinates

chr14:+:1650823..1654542

Molecular Weight (calculated)

27349.5 Da

IEP (calculated)

4.610

GRAVY (calculated)

-0.407

Length

242 amino acids

Sequence
(BLAST)

001: MPSAQDPFYV VKQEIQESID KLQSTFHQWE KTADAGERSN LSKEVLGSCE SIEWQVDELD KAISVASRDP SWYGIDEVEV ENRRKWTSDA RTQVSTAKKA
101: VQAGKGLNNA SLNGMHKELM RLPSSHQTTS NQYAAQDNDD FIESESDRQM LLIKRQDEEL DELSLSVQRI GGVGLTIHEE LLAQEKIIDE LGNEMDSTSN
201: RLDFVQKKVA MVMKKASAKG QIMMILGLLA LFIFLFILVF FT

Best Arabidopsis Sequence Match ( AT1G28490.1 )
(BLAST)

001: MSSAQDPFYI VKEEIQDSID KLQSTFHKWE RISPDMGDQA HVAKELVATC GSIEWQVDEL EKAITVAAKD PSWYGIDEAE LEKRRRWTSN ARTQVRNVKS
101: GVLAGKVSSG AGHASEVRRE LMRMPNSGEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSV QRIGGVGLTI HDELVAQERI IDELDTEMDS
201: TKNRLEFVQK KVGMVMKKAG AKGQMMMICF LLVLFIILFV LVFLT

Arabidopsis Description

SYP61Syntaxin-61 [Source:UniProtKB/Swiss-Prot;Acc:Q946Y7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.