CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX84933
CDX88803
CDX89333
CDX92368
CDX94330
CDX97739
CDY03907
CDY09128
CDY15722
CDY27605
CDY30157
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G28490.1	CDX84933	AT1G27300.1	21798944
AT1G28490.1	CDY03907	AT1G27300.1	21798944
AT1G28490.1	CDY15722	AT1G27300.1	21798944
AT1G28490.1	CDY27605	AT1G27300.1	21798944
AT1G28490.1	CDX97739	AT3G16310.1	21798944
AT1G28490.1	CDY30157	AT3G16310.1	21798944
AT1G28490.1	CDX89333	AT4G26455.1	21798944
AT1G28490.1	CDX94330	AT4G26455.1	21798944
AT1G28490.1	CDX70995	AT5G22290.1	21798944
AT1G28490.1	CDX88803	AT5G22290.1	21798944
AT1G28490.1	CDX92368	AT5G22290.1	21798944
AT1G28490.1	CDY09128	AT5G22290.1	21798944
AT1G28490.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010866.1-P	Field mustard	cytosol	52.46	91.43
CDX94628	Canola	cytosol, golgi, nucleus	52.22	91.02
CDY15661	Canola	cytosol, golgi, nucleus	51.99	90.61
CDY34096	Canola	cytosol, golgi, nucleus	51.05	88.98
CDY30816	Canola	nucleus	50.35	87.76
CDX90156	Canola	cytosol, nucleus, plasma membrane	90.4	87.53
AT1G28490.1	Thale cress	nucleus	48.95	85.31
KRG98757	Soybean	cytosol, golgi, nucleus	36.53	63.41
KRH46186	Soybean	cytosol, golgi, nucleus	36.53	63.41
PGSC0003DMT400039964	Potato	nucleus	36.53	63.16
Solyc12g089150.1.1	Tomato	cytosol	18.5	61.24
KRH73753	Soybean	cytosol, golgi, nucleus	34.66	61.16
KRH14393	Soybean	cytosol, golgi, nucleus	34.43	60.74
EES04275	Sorghum	cytosol	32.32	59.48
GSMUA_Achr6P18060_001	Banana	cytosol	33.96	58.23
TraesCS3B01G577200.1	Wheat	cytosol	31.38	57.27
TraesCS3A01G508800.1	Wheat	cytosol	31.38	57.27
Os01t0963300-01	Rice	plasma membrane	31.38	57.27
TraesCS3D01G516200.1	Wheat	cytosol	31.38	57.27
VIT_05s0094g00860.t01	Wine grape	endoplasmic reticulum, vacuole	38.64	56.7
GSMUA_Achr6P25690_001	Banana	cytosol, golgi, nucleus	33.49	56.08
HORVU3Hr1G111910.1	Barley	cytosol	30.68	55.74
Os11t0168100-01	Rice	plasma membrane	30.21	54.89
EES08039	Sorghum	cytosol, golgi, nucleus	30.21	54.89
TraesCS4A01G208100.1	Wheat	cytosol, golgi, nucleus	29.27	53.19
TraesCS4B01G111700.1	Wheat	cytosol, golgi, nucleus	29.27	53.19
Zm00001d048147_P002	Maize	cytosol	31.38	53.17
TraesCS3A01G508700.1	Wheat	cytosol, golgi, peroxisome	26.7	51.12
KRH33360	Soybean	nucleus	15.93	50.75
GSMUA_Achr10P...	Banana	cytosol	19.91	50.6
Zm00001d042018_P003	Maize	cytosol, golgi, nucleus	31.15	50.0
HORVU4Hr1G019940.1	Barley	cytosol	28.34	46.54
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	5.39	44.23
KRH25827	Soybean	nucleus	10.3	21.78

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.90	MapMan:22.7.4.2	GO:A0A078HD44	UniProt:A0A078HD44	EnsemblPlants:CDY35752
ProteinID:CDY35752	ProteinID:CDY35752.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0048193	EnsemblPlantsGene:GSBRNA2T00059197001	InterPro:IPR000727
InterPro:OPA3-like	PFAM:PF05739	PFAM:PF07047	PFAM:PF09177	PANTHER:PTHR12499	PANTHER:PTHR12499:SF7
InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin-6_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EF014E	SEG:seg	:	:	:	:

Description

BnaC03g58730DBnaC03g58730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD44]

Coordinates

chrLK032359:+:357363..360880

Molecular Weight (calculated)

48229.4 Da

IEP (calculated)

9.424

GRAVY (calculated)

-0.446

Length

427 amino acids

Sequence
(BLAST)

001: MSSAQDPFYI IKEEIQDSID KLQSTFHKWE RVSPGMGDQV HVTKELLANC GSIEWQVDEL GKAVAVAAKD PALYGIDEAE LERRRRWTSN ARTQVRNVKT
101: GVLAGKGSAG AGNASEVRRE LMRMPNSSEA SRYDQYGGRD DDGFVQSESD RQMLLIKQQD EELDELSKSW GLLPDELVAQ ERIIDELGTE MDSTKNRLDF
201: VQKKVGMVMK KAGAKGQMMM ICFLLVLFII LFKIEIMFDF STMILSSRRK RKMVLPLMKL GTLLVKTISK PLASQLKHQA KVHPRFRQSI INFAQRNHRV
301: TTQIQRRIYG HATDVEIRPL NEEKAVQAAV DLIGELFIFA VGGGVVIFEV QRSSRSEARK EEARKQELEE LRIKDEELEK KMALLQSKLA EVEELAKARG
401: LTGIFKVKQQ PGTPTSEKPD AKSSSSS

Best Arabidopsis Sequence Match ( AT1G28510.1 )
(BLAST)

001: MVLPLMKLGT LAVKTISKPL ASQLKHQAKV HPKFRQSIIN FAQRNHRITT QMQRRIYGHA TDVEIRPLDE EKAVQAAVDL IGEIFLFGVG GAVVVFEVQR
101: SSRSEARKEE ARKQELEELR IKDEELEKQV ADLKSKLEEL EQLAKARGLS GIFQLKPQPG TTASGKPDKS S

Arabidopsis Description

At1g28510/F3M18_5 [Source:UniProtKB/TrEMBL;Acc:Q9SGP9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.