Factsheet for VIT_00s2887g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
vacuole 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0094g00860.t01
VIT_06s0080g00970.t01
VIT_09s0002g03770.t01
VIT_10s0003g01830.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	VIT_05s0094g00860.t01	AT1G28490.1	21798944
AT1G16240.1	VIT_09s0002g03770.t01	AT3G16310.1	21798944
AT1G16240.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G16240.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT1G16240.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1613g00010.t01	Wine grape	cytosol	97.92	64.38
HORVU4Hr1G023890.1	Barley	cytosol	50.0	27.91
Solyc12g014550.1.1	Tomato	cytosol	64.58	20.26
Solyc07g065030.2.1	Tomato	plastid	83.33	19.14
PGSC0003DMT400057423	Potato	cytosol	83.33	17.17
VIT_19s0090g01300.t01	Wine grape	cytosol	83.33	16.67
Bra008425.1-P	Field mustard	cytosol	72.92	14.96
CDY49743	Canola	cytosol	72.92	14.96
CDY68585	Canola	cytosol	72.92	14.83
GSMUA_Achr6P34260_001	Banana	cytosol	68.75	14.16
KXG27212	Sorghum	cytosol	66.67	13.85
Zm00001d050146_P001	Maize	extracellular, mitochondrion	66.67	13.85
CDY52847	Canola	cytosol	66.67	13.73
CDX81754	Canola	cytosol	66.67	13.73
Bra026727.1-P	Field mustard	cytosol	66.67	13.73
Zm00001d002148_P002	Maize	cytosol	64.58	13.42
CDY35073	Canola	cytosol	64.58	13.36
TraesCS5B01G069400.1	Wheat	cytosol	64.58	13.36
TraesCS5A01G062300.1	Wheat	cytosol	64.58	13.36
Bra026074.1-P	Field mustard	cytosol	64.58	13.36
Os08t0277900-01	Rice	plasma membrane	64.58	13.36
Os02t0119400-01	Rice	plasma membrane	64.58	13.36
AT1G16230.1	Thale cress	cytosol	52.08	12.95
CDY33349	Canola	cytosol	62.5	12.93
AT1G16240.1	Thale cress	cytosol	62.5	12.93
AT1G79590.3	Thale cress	golgi, plasma membrane	70.83	12.88
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	64.58	12.81
Bra035128.1-P	Field mustard	cytosol	72.92	12.77
PGSC0003DMT400033466	Potato	endoplasmic reticulum	70.83	12.69
TraesCS6A01G059100.1	Wheat	cytosol	60.42	12.5
TraesCS6B01G079400.1	Wheat	cytosol	60.42	12.5
TraesCSU01G121500.1	Wheat	cytosol	60.42	12.5
TraesCS5D01G073500.2	Wheat	cytosol	64.58	12.02
AT1G16225.2	Thale cress	cytosol	45.83	9.87
HORVU6Hr1G011180.1	Barley	mitochondrion	58.33	9.27
GSMUA_Achr9P03240_001	Banana	cytosol	70.83	6.97
VIT_00s0227g00170.t01	Wine grape	mitochondrion	0.0	0.0
VIT_00s0582g00030.t01	Wine grape	mitochondrion	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s2887g00010	EMBL:FN596230	EnsemblPlants:VIT_00s2887g00010.t01	EnsemblPlantsGene:VIT_00s2887g00010	PANTHER:PTHR19957	PANTHER:PTHR19957:SF207
ProteinID:CCB57484	ProteinID:CCB57484.1	SEG:seg	UniParc:UPI0002108B7D	UniProt:F6HS25	MapMan:35.2

Description

No Description!

Coordinates

chrUn:+:43218988..43219181

Molecular Weight (calculated)

5299.6 Da

IEP (calculated)

11.991

GRAVY (calculated)

-0.300

Length

48 amino acids

Sequence
(BLAST)

1: MISERISLPT SGSETQRHAS AIRRKITILG TRLDSLQSLL LKLPGKQP

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.