Factsheet for AT1G16225.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G16230.1	Thale cress	cytosol	60.54	69.95
AT1G16240.1	Thale cress	cytosol	54.26	52.16
Bra026074.1-P	Field mustard	cytosol	51.12	49.14
CDY35073	Canola	cytosol	51.12	49.14
Bra026727.1-P	Field mustard	cytosol	50.67	48.5
CDY33349	Canola	cytosol	50.22	48.28
CDX81754	Canola	cytosol	50.22	48.07
CDY52847	Canola	cytosol	50.22	48.07
PGSC0003DMT400057423	Potato	cytosol	47.98	45.92
VIT_00s2887g00010.t01	Wine grape	cytosol	9.87	45.83
Solyc07g065030.2.1	Tomato	plastid	42.15	44.98
KRH14303	Soybean	endoplasmic reticulum	46.64	44.83
VIT_00s1613g00010.t01	Wine grape	cytosol	14.35	43.84
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	43.95	42.98
VIT_00s0582g00030.t01	Wine grape	mitochondrion	29.6	42.31
VIT_00s0227g00170.t01	Wine grape	mitochondrion	29.6	42.31
Zm00001d050146_P001	Maize	extracellular, mitochondrion	43.5	41.99
KXG27212	Sorghum	cytosol	43.5	41.99
Zm00001d002148_P002	Maize	cytosol	43.05	41.56
VIT_19s0090g01300.t01	Wine grape	cytosol	44.39	41.25
Solyc12g014550.1.1	Tomato	cytosol	28.25	41.18
AT1G79590.3	Thale cress	golgi, plasma membrane	48.43	40.91
Os08t0277900-01	Rice	plasma membrane	42.15	40.52
GSMUA_Achr6P34260_001	Banana	cytosol	42.15	40.34
Os02t0119400-01	Rice	plasma membrane	41.7	40.09
TraesCS5B01G069400.1	Wheat	cytosol	41.7	40.09
TraesCS5A01G062300.1	Wheat	cytosol	41.7	40.09
KRG98671	Soybean	endoplasmic reticulum	44.84	39.84
TraesCS6A01G059100.1	Wheat	cytosol	40.36	38.79
TraesCS6B01G079400.1	Wheat	cytosol	40.36	38.79
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	41.7	38.43
TraesCSU01G121500.1	Wheat	cytosol	39.91	38.36
TraesCS5D01G073500.2	Wheat	cytosol	41.7	36.05
HORVU4Hr1G023890.1	Barley	cytosol	12.56	32.56
PGSC0003DMT400033466	Potato	endoplasmic reticulum	37.67	31.34
HORVU6Hr1G011180.1	Barley	mitochondrion	42.15	31.13
KRH73827	Soybean	plastid	7.17	23.19
GSMUA_Achr9P03240_001	Banana	cytosol	43.05	19.67

Protein Annotations

ArrayExpress:AT1G16225	EnsemblPlants:AT1G16225.2	EnsemblPlantsGene:AT1G16225	EntrezGene:838191	Gene3D:1.20.5.110	InterPro:IPR000727
InterPro:T_SNARE_dom	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	PFscan:PS50192	ProteinID:ANM60878.1	ProteinID:OAP12383.1
RefSeq:AT1G16225	RefSeq:AT1G16225-TAIR-G	RefSeq:NP_001323129.1	SEG:seg	SUPFAM:SSF58038	TAIR:AT1G16225
Unigene:At.50931	UniParc:UPI0007E28D43	UniProt:A0A178W4U6	UniProt:A0A1P8AW43	MapMan:22.7.4.1	:

Description

Target SNARE coiled-coil domain protein [Source:TAIR;Acc:AT1G16225]

Coordinates

chr1:-:5550791..5552379

Molecular Weight (calculated)

25123.8 Da

IEP (calculated)

8.087

GRAVY (calculated)

-0.163

Length

223 amino acids

Sequence
(BLAST)

001: MASFCNSWKR KHNEAIKLSE EIDGMILERS SLAETSSYAR GHASYMRRKI TILANGVQTL KNLLAESQGK SISAKEMSRC KDMVEDLRSK AYQMASALDM
101: LKFSNIGSLL GQDDIMSRVI DMDNQEIVGF QRTTMKVQDK ALEMLEKGVM HLKREALAMN MELGLQTRLI DRLDHHVDVS ASDVEELQRS IDTGVCMTLL
201: LSVVVVVFGL SEFVKFGRRR ILG

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.