Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 20.26 | 64.58 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 27.45 | 57.53 |
| PGSC0003DMT400033466 | Potato | endoplasmic reticulum | 82.35 | 47.01 |
| Solyc07g065030.2.1 | Tomato | plastid | 64.05 | 46.89 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 66.01 | 44.3 |
| KRH14303 | Soybean | endoplasmic reticulum | 66.67 | 43.97 |
| KRG98671 | Soybean | endoplasmic reticulum | 66.01 | 40.24 |
| CDY49743 | Canola | cytosol | 60.13 | 39.32 |
| Bra008425.1-P | Field mustard | cytosol | 60.13 | 39.32 |
| CDY68585 | Canola | cytosol | 60.13 | 38.98 |
| Bra026727.1-P | Field mustard | cytosol | 58.82 | 38.63 |
| CDY33349 | Canola | cytosol | 58.17 | 38.36 |
| CDY35073 | Canola | cytosol | 58.17 | 38.36 |
| Bra026074.1-P | Field mustard | cytosol | 58.17 | 38.36 |
| CDX81754 | Canola | cytosol | 58.17 | 38.2 |
| CDY52847 | Canola | cytosol | 58.17 | 38.2 |
| Solyc10g081060.1.1 | Tomato | plastid | 54.25 | 37.22 |
| AT1G16230.1 | Thale cress | cytosol | 46.41 | 36.79 |
| AT1G16240.1 | Thale cress | cytosol | 54.9 | 36.21 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 57.52 | 33.33 |
| Bra035128.1-P | Field mustard | cytosol | 59.48 | 33.21 |
| AT1G16225.2 | Thale cress | cytosol | 41.18 | 28.25 |
| KRH73827 | Soybean | plastid | 1.96 | 4.35 |
Protein Annotations
| EnsemblPlants:Solyc12g014550.1.1 | EnsemblPlantsGene:Solyc12g014550.1 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF149 | UniParc:UPI000276A967 | UniProt:K4DCZ0 |
| MapMan:22.7.4.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:5553309..5554724
Molecular Weight (calculated)
17298.0 Da
IEP (calculated)
5.978
GRAVY (calculated)
-0.470
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTFGDFWIQ EYNKAGKLAD KIIYMISERN LLPATGPEAQ CHSSLMRMKI TILGFRLDSL QCIDSKLPGK QRLTEKEMNL QKVMLENLKS KATEMASTLN
101: MSNFANRDNL LGLETKTTDA TSRTTGLDNY GVVGLQRQIM KEQDEGLEKL EES
101: MSNFANRDNL LGLETKTTDA TSRTTGLDNY GVVGLQRQIM KEQDEGLEKL EES
001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
Arabidopsis Description
SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.