CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98757
KRH09922
KRH11076
KRH14393
KRH21197
KRH22653
KRH23409
KRH25827
KRH26664
KRH33360
KRH42923
KRH42926
KRH45251
KRH46186
KRH56393
KRH59035
KRH59036
KRH62532
KRH73753

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	KRG98757	AT1G28490.1	21798944
AT1G16240.1	KRH14393	AT1G28490.1	21798944
AT1G16240.1	KRH25827	AT1G28490.1	21798944
AT1G16240.1	KRH33360	AT1G28490.1	21798944
AT1G16240.1	KRH46186	AT1G28490.1	21798944
AT1G16240.1	KRH73753	AT1G28490.1	21798944
AT1G16240.1	KRH09922	AT3G16310.1	21798944
AT1G16240.1	KRH23409	AT3G16310.1	21798944
AT1G16240.1	KRH11076	AT4G19030.1	21798944
AT1G16240.1	KRH21197	AT4G19030.1	21798944
AT1G16240.1	KRH42923	AT4G19030.1	21798944
AT1G16240.1	KRH42926	AT4G19030.1	21798944
AT1G16240.1	KRH45251	AT4G19030.1	21798944
AT1G16240.1	KRH59035	AT4G19030.1	21798944
AT1G16240.1	KRH59036	AT4G19030.1	21798944
AT1G16240.1	KRH56393	AT4G26455.1	21798944
AT1G16240.1	KRH62532	AT4G26455.1	21798944
AT1G16240.1	KRH22653	AT5G22290.1	21798944
AT1G16240.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98671	Soybean	endoplasmic reticulum	97.81	88.84
KRH14303	Soybean	endoplasmic reticulum	89.04	87.5
VIT_00s0582g00030.t01	Wine grape	mitochondrion	58.33	85.26
VIT_00s0227g00170.t01	Wine grape	mitochondrion	58.33	85.26
VIT_19s0090g01300.t01	Wine grape	cytosol	87.28	82.92
Solyc07g065030.2.1	Tomato	plastid	74.12	80.86
PGSC0003DMT400057423	Potato	cytosol	79.82	78.11
Bra026727.1-P	Field mustard	cytosol	78.51	76.82
CDY52847	Canola	cytosol	78.07	76.39
Bra008425.1-P	Field mustard	cytosol	77.63	75.64
CDY49743	Canola	cytosol	77.63	75.64
CDY35073	Canola	cytosol	76.32	75.0
CDY33349	Canola	cytosol	76.32	75.0
Bra026074.1-P	Field mustard	cytosol	76.32	75.0
CDX81754	Canola	cytosol	76.32	74.68
CDY68585	Canola	cytosol	76.32	73.73
AT1G16240.1	Thale cress	cytosol	73.25	71.98
KXG27212	Sorghum	cytosol	72.37	71.43
Zm00001d002148_P002	Maize	cytosol	71.93	71.0
Zm00001d050146_P001	Maize	extracellular, mitochondrion	71.49	70.56
Os08t0277900-01	Rice	plasma membrane	71.49	70.26
GSMUA_Achr6P34260_001	Banana	cytosol	69.74	68.24
TraesCS5A01G062300.1	Wheat	cytosol	69.3	68.1
TraesCS5B01G069400.1	Wheat	cytosol	69.3	68.1
Os02t0119400-01	Rice	plasma membrane	67.54	66.38
Solyc12g014550.1.1	Tomato	cytosol	44.3	66.01
TraesCS6A01G059100.1	Wheat	cytosol	66.67	65.52
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	69.3	65.29
TraesCS6B01G079400.1	Wheat	cytosol	66.23	65.09
TraesCSU01G121500.1	Wheat	cytosol	65.79	64.66
AT1G79590.3	Thale cress	golgi, plasma membrane	73.68	63.64
Bra035128.1-P	Field mustard	cytosol	75.44	62.77
TraesCS5D01G073500.2	Wheat	cytosol	69.3	61.24
KRH73827	Soybean	plastid	17.98	59.42
AT1G16230.1	Thale cress	cytosol	44.3	52.33
PGSC0003DMT400033466	Potato	endoplasmic reticulum	59.65	50.75
HORVU6Hr1G011180.1	Barley	mitochondrion	64.91	49.01
AT1G16225.2	Thale cress	cytosol	42.98	43.95
HORVU4Hr1G023890.1	Barley	cytosol	15.35	40.7
GSMUA_Achr9P03240_001	Banana	cytosol	71.93	33.61

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100799465	MapMan:22.7.4.1	EMBL:ACUP02005332	EnsemblPlantsGene:GLYMA_08G322600	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201
GO:GO:0048278	UniProt:I1KYD6	InterPro:IPR000727	EnsemblPlants:KRH46259	ProteinID:KRH46259	ProteinID:KRH46259.1
PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF207	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002338CB6	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:44127917..44132476

Molecular Weight (calculated)

25420.0 Da

IEP (calculated)

9.231

GRAVY (calculated)

-0.239

Length

228 amino acids

Sequence
(BLAST)

001: MASSDSWMKE YNEAVKLADD INGMISERSS FPASGPETQR HASAIRRKIT ILGTRLDSLQ SLLSKVPAKT EKEMNRRKDM LANLRTKVNQ MASTLNMSNF
101: ANRDSLLGPE IKSDAMSRTV GLDNSGLVGL QRQIMKEQDD GLEKLEETVI STKHIALAVN EELNLHTRLI DDLDQHVDVT DSRLRRVQKN LAVLNKRTKG
201: GCSCLCMLLS VIGIVGLVVV IWLLVKYL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.