Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 4
- vacuole 1
- plasma membrane 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16240.1 | VIT_05s0094g00860.t01 | AT1G28490.1 | 21798944 |
| AT1G16240.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT1G16240.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT1G16240.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
| AT1G16240.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 100.0 | 100.0 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 85.26 | 58.33 |
| KRH14303 | Soybean | endoplasmic reticulum | 85.26 | 57.33 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 85.9 | 55.83 |
| KRG98671 | Soybean | endoplasmic reticulum | 85.26 | 52.99 |
| Bra026727.1-P | Field mustard | cytosol | 73.72 | 49.36 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 73.72 | 49.36 |
| CDY52847 | Canola | cytosol | 73.08 | 48.93 |
| Bra008425.1-P | Field mustard | cytosol | 73.08 | 48.72 |
| CDY49743 | Canola | cytosol | 73.08 | 48.72 |
| AT1G16240.1 | Thale cress | cytosol | 72.44 | 48.71 |
| KXG27212 | Sorghum | cytosol | 71.79 | 48.48 |
| Zm00001d002148_P002 | Maize | cytosol | 71.79 | 48.48 |
| CDY33349 | Canola | cytosol | 71.79 | 48.28 |
| CDY35073 | Canola | cytosol | 71.79 | 48.28 |
| Bra026074.1-P | Field mustard | cytosol | 71.79 | 48.28 |
| Os08t0277900-01 | Rice | plasma membrane | 71.79 | 48.28 |
| CDX81754 | Canola | cytosol | 71.15 | 47.64 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 69.87 | 47.19 |
| CDY68585 | Canola | cytosol | 71.15 | 47.03 |
| TraesCS6A01G059100.1 | Wheat | cytosol | 69.23 | 46.55 |
| TraesCS5A01G062300.1 | Wheat | cytosol | 68.59 | 46.12 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 68.59 | 46.12 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 68.59 | 46.12 |
| Os02t0119400-01 | Rice | plasma membrane | 67.95 | 45.69 |
| TraesCSU01G121500.1 | Wheat | cytosol | 67.95 | 45.69 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 68.59 | 44.21 |
| TraesCS5D01G073500.2 | Wheat | cytosol | 68.59 | 41.47 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 69.23 | 40.91 |
| Bra035128.1-P | Field mustard | cytosol | 69.23 | 39.42 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 67.95 | 35.1 |
| AT1G16230.1 | Thale cress | cytosol | 42.95 | 34.72 |
| AT1G16225.2 | Thale cress | cytosol | 42.31 | 29.6 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 73.08 | 23.36 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 1.28 | 2.33 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.5.110 | EntrezGene:100265526 | wikigene:100265526 | MapMan:22.7.4.1 | ProteinID:CCB50007 | ProteinID:CCB50007.1 |
| ProteinID:CCB50194 | ProteinID:CCB50194.1 | UniProt:F6HD99 | EMBL:FN595520 | EMBL:FN595580 | GO:GO:0000149 |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0031201 |
| GO:GO:0048278 | InterPro:IPR000727 | EntrezGene:LOC100265526 | wikigene:LOC100265526 | PFAM:PF05739 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF207 | SMART:SM00397 | SUPFAM:SSF58038 | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI00021095E7 | ArrayExpress:VIT_00s0227g00170 | EnsemblPlantsGene:VIT_00s0227g00170 | EnsemblPlants:VIT_00s0227g00170.t01 | RefSeq:XP_002272842 | RefSeq:XP_002272842.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:15145462..15146308
Molecular Weight (calculated)
17417.5 Da
IEP (calculated)
8.077
GRAVY (calculated)
-0.006
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRRKDMLSN LRSKVSQMAS TLNMSNFANR DSLLGPEIKP ADAMSRTTGL DNQGLVGLQR QIMKEQDEGL DNLEETVIST KHIALAVNEE LDLHTRLIDT
101: LDQHVDTTDS RLGRVQKNLA ILNKRTKGGC TCFCMLLLVI GIVILIVVIL VLIKYL
101: LDQHVDTTDS RLGRVQKNLA ILNKRTKGGC TCFCMLLLVI GIVILIVVIL VLIKYL
001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM
Arabidopsis Description
SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.