Factsheet for HORVU6Hr1G011180.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G076010.1
HORVU2Hr1G081800.3
HORVU3Hr1G026980.2
HORVU3Hr1G071060.1
HORVU3Hr1G111910.1
HORVU4Hr1G019940.1
HORVU5Hr1G071910.1
HORVU7Hr1G048940.3
HORVU7Hr1G088900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	HORVU3Hr1G111910.1	AT1G28490.1	21798944
AT1G16240.1	HORVU4Hr1G019940.1	AT1G28490.1	21798944
AT1G16240.1	HORVU1Hr1G076010.1	AT3G16310.1	21798944
AT1G16240.1	HORVU3Hr1G026980.2	AT3G16310.1	21798944
AT1G16240.1	HORVU3Hr1G071060.1	AT3G16310.1	21798944
AT1G16240.1	HORVU7Hr1G088900.1	AT4G19030.1	21798944
AT1G16240.1	HORVU2Hr1G081800.3	AT4G26455.1	21798944
AT1G16240.1	HORVU5Hr1G071910.1	AT4G26455.1	21798944
AT1G16240.1	HORVU7Hr1G048940.3	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G059100.1	Wheat	cytosol	74.5	96.98
TraesCS6B01G079400.1	Wheat	cytosol	74.17	96.55
TraesCSU01G121500.1	Wheat	cytosol	73.51	95.69
Os02t0119400-01	Rice	plasma membrane	64.9	84.48
KXG27212	Sorghum	cytosol	63.91	83.55
Zm00001d050146_P001	Maize	extracellular, mitochondrion	62.91	82.25
Zm00001d002148_P002	Maize	cytosol	62.58	81.82
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	61.26	76.45
HORVU4Hr1G023890.1	Barley	cytosol	21.52	75.58
GSMUA_Achr6P34260_001	Banana	cytosol	52.65	68.24
VIT_00s0582g00030.t01	Wine grape	mitochondrion	35.1	67.95
VIT_00s0227g00170.t01	Wine grape	mitochondrion	35.1	67.95
KRH14303	Soybean	endoplasmic reticulum	50.66	65.95
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	49.01	64.91
CDY35073	Canola	cytosol	47.68	62.07
Bra026074.1-P	Field mustard	cytosol	47.68	62.07
VIT_19s0090g01300.t01	Wine grape	cytosol	49.01	61.67
CDY33349	Canola	cytosol	47.35	61.64
CDX81754	Canola	cytosol	46.69	60.52
Bra026727.1-P	Field mustard	cytosol	46.69	60.52
KRG98671	Soybean	endoplasmic reticulum	50.0	60.16
CDY52847	Canola	cytosol	46.36	60.09
CDY49743	Canola	cytosol	46.36	59.83
Bra008425.1-P	Field mustard	cytosol	46.36	59.83
CDY68585	Canola	cytosol	46.03	58.9
AT1G16240.1	Thale cress	cytosol	45.03	58.62
VIT_00s2887g00010.t01	Wine grape	cytosol	9.27	58.33
PGSC0003DMT400072222	Potato	cytosol	44.37	58.01
KRH73827	Soybean	plastid	13.24	57.97
Solyc10g081060.1.1	Tomato	plastid	42.72	57.85
VIT_00s1613g00010.t01	Wine grape	cytosol	13.58	56.16
AT1G79590.3	Thale cress	golgi, plasma membrane	45.7	52.27
Bra035128.1-P	Field mustard	cytosol	44.04	48.54
AT1G16230.1	Thale cress	cytosol	30.13	47.15
AT1G16225.2	Thale cress	cytosol	31.13	42.15
GSMUA_Achr9P03240_001	Banana	cytosol	53.31	32.99

Protein Annotations

EnsemblPlants:HORVU6Hr1G011180.1	EnsemblPlantsGene:HORVU6Hr1G011180	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil	PANTHER:PTHR19957	PANTHER:PTHR19957:SF148	PFAM:PF05739
PFscan:PS50192	SEG:seg	SMART:SM00397	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000B46A69E
UniProt:A0A287TAL6	MapMan:22.7.4.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:19621868..19624783

Molecular Weight (calculated)

33383.4 Da

IEP (calculated)

10.592

GRAVY (calculated)

-0.444

Length

302 amino acids

Sequence
(BLAST)

001: RSYAFLRQRA RHGQGNHQPQ IARQRGKEAS IAVAERIDRA AGDATRRGRT GRPAHRSTPE EPIGSISLPA MASSADPWVR EHGEAARLAD DVASMVADRA
101: ALPQSGPEAM RHTSAIRRKI TILGTRLDTL EGMLARLPPK SITDKELHKR RDMLSNLKSR AKQMAESFNM STFANREDLL GQSKKAADDM SRVAGLDNQG
201: IVGLQRQIMK EQDEGLEKLE QTVLSAKHVA LAVNEELDLH ARLIDDLDDH VDGTNSRLQR VQKRLAVLNK RAKGGCSCMS LLLSTVGIVM LVVIVWLLIK
301: YL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.