CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX89333
CDX90156
CDX92368
CDX94330
CDX94628
CDX97739
CDX98596
CDX99411
CDY01565
CDY09128
CDY15661
CDY30157
CDY30816
CDY34096
CDY35676
CDY35752

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	CDX90156	AT1G28490.1	21798944
AT1G16240.1	CDX94628	AT1G28490.1	21798944
AT1G16240.1	CDY15661	AT1G28490.1	21798944
AT1G16240.1	CDY30816	AT1G28490.1	21798944
AT1G16240.1	CDY34096	AT1G28490.1	21798944
AT1G16240.1	CDY35752	AT1G28490.1	21798944
AT1G16240.1	CDX97739	AT3G16310.1	21798944
AT1G16240.1	CDY30157	AT3G16310.1	21798944
AT1G16240.1	CDX78905	AT4G19030.1	21798944
AT1G16240.1	CDX98596	AT4G19030.1	21798944
AT1G16240.1	CDX99411	AT4G19030.1	21798944
AT1G16240.1	CDY01565	AT4G19030.1	21798944
AT1G16240.1	CDX89333	AT4G26455.1	21798944
AT1G16240.1	CDX94330	AT4G26455.1	21798944
AT1G16240.1	CDX70995	AT5G22290.1	21798944
AT1G16240.1	CDX88803	AT5G22290.1	21798944
AT1G16240.1	CDX92368	AT5G22290.1	21798944
AT1G16240.1	CDY09128	AT5G22290.1	21798944
AT1G16240.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026074.1-P	Field mustard	cytosol	98.71	98.71
CDY35073	Canola	cytosol	98.71	98.71
CDY52847	Canola	cytosol	94.83	94.42
CDX81754	Canola	cytosol	94.4	93.99
AT1G16240.1	Thale cress	cytosol	86.64	86.64
CDY49743	Canola	cytosol	84.91	84.19
CDY68585	Canola	cytosol	83.62	82.2
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	75.0	76.32
KRH14303	Soybean	endoplasmic reticulum	75.0	75.0
VIT_00s0582g00030.t01	Wine grape	mitochondrion	48.28	71.79
VIT_00s0227g00170.t01	Wine grape	mitochondrion	48.28	71.79
VIT_19s0090g01300.t01	Wine grape	cytosol	73.28	70.83
PGSC0003DMT400057423	Potato	cytosol	71.12	70.82
Solyc07g065030.2.1	Tomato	plastid	63.79	70.81
KRG98671	Soybean	endoplasmic reticulum	75.43	69.72
KXG27212	Sorghum	cytosol	66.38	66.67
Zm00001d050146_P001	Maize	extracellular, mitochondrion	65.95	66.23
VIT_00s1613g00010.t01	Wine grape	cytosol	20.69	65.75
Os08t0277900-01	Rice	plasma membrane	65.52	65.52
Zm00001d002148_P002	Maize	cytosol	65.09	65.37
TraesCS5B01G069400.1	Wheat	cytosol	64.66	64.66
TraesCS5A01G062300.1	Wheat	cytosol	64.66	64.66
Os02t0119400-01	Rice	plasma membrane	64.66	64.66
GSMUA_Achr6P34260_001	Banana	cytosol	64.66	64.38
TraesCS6A01G059100.1	Wheat	cytosol	62.93	62.93
TraesCS6B01G079400.1	Wheat	cytosol	62.5	62.5
VIT_00s2887g00010.t01	Wine grape	cytosol	12.93	62.5
TraesCSU01G121500.1	Wheat	cytosol	62.07	62.07
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	64.66	61.98
Solyc12g014550.1.1	Tomato	cytosol	38.36	58.17
TraesCS5D01G073500.2	Wheat	cytosol	64.66	58.14
AT1G16230.1	Thale cress	cytosol	48.28	58.03
KRH73827	Soybean	plastid	16.81	56.52
AT1G16225.2	Thale cress	cytosol	48.28	50.22
PGSC0003DMT400033466	Potato	endoplasmic reticulum	54.74	47.39
HORVU6Hr1G011180.1	Barley	mitochondrion	61.64	47.35
HORVU4Hr1G023890.1	Barley	cytosol	14.22	38.37
GSMUA_Achr9P03240_001	Banana	cytosol	65.95	31.35

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	GO:A0A078H770	UniProt:A0A078H770	EnsemblPlants:CDY33349	ProteinID:CDY33349
ProteinID:CDY33349.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00054191001	InterPro:IPR000727
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	SMART:SM00397
SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EAF675	SEG:seg

Description

BnaC05g12340DBnaC05g12340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H770]

Coordinates

chrLK032312:+:207832..209266

Molecular Weight (calculated)

26110.8 Da

IEP (calculated)

9.150

GRAVY (calculated)

-0.326

Length

232 amino acids

Sequence
(BLAST)

001: MASSSDSWMR EYNEALKLAE DINGMISERN KSSLTGPDAQ RRASAIRRKI TIFGTRLESL HSLLSKIHGK PISEKEMNRR KDMIGNLRSQ ANQMASVLNM
101: SNFANRDSLL GSEIKADDSM SRVASMDNQG IVGFQRQVMR EQDEGLEKLE ETVMSTKHIA LAVNEELGLQ TRLIDDLDYH VDVTDSRLRR VQKNLAVMNK
201: NMRSGCSCMS MLLSMLGIVG LAVVIWLLVK YL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.