Factsheet for PGSC0003DMT400057423

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
vacuole 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400039964
PGSC0003DMT400050482
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	PGSC0003DMT400039964	AT1G28490.1	21798944
AT1G16240.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G16240.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G16240.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G16240.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G16240.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT1G16240.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G16240.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065030.2.1	Tomato	plastid	88.41	98.56
VIT_00s2887g00010.t01	Wine grape	cytosol	17.17	83.33
KRH14303	Soybean	endoplasmic reticulum	80.69	81.03
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	78.11	79.82
VIT_00s1613g00010.t01	Wine grape	cytosol	24.03	76.71
KRG98671	Soybean	endoplasmic reticulum	78.97	73.31
Bra026727.1-P	Field mustard	cytosol	72.53	72.53
CDY52847	Canola	cytosol	72.1	72.1
CDY49743	Canola	cytosol	72.1	71.79
Bra008425.1-P	Field mustard	cytosol	72.1	71.79
CDX81754	Canola	cytosol	71.24	71.24
CDY33349	Canola	cytosol	70.82	71.12
CDY35073	Canola	cytosol	70.82	71.12
Bra026074.1-P	Field mustard	cytosol	70.82	71.12
AT1G16240.1	Thale cress	cytosol	69.96	70.26
CDY68585	Canola	cytosol	70.82	69.92
PGSC0003DMT400072222	Potato	cytosol	66.52	67.1
AT1G79590.3	Thale cress	golgi, plasma membrane	69.53	61.36
Bra035128.1-P	Field mustard	cytosol	69.1	58.76
AT1G16230.1	Thale cress	cytosol	47.21	56.99
PGSC0003DMT400033466	Potato	endoplasmic reticulum	64.38	55.97
KRH73827	Soybean	plastid	14.59	49.28
AT1G16225.2	Thale cress	cytosol	45.92	47.98

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102597197	MapMan:22.7.4.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	InterPro:IPR000727	UniProt:M1C107	PFAM:PF05739	EnsemblPlantsGene:PGSC0003DMG400022297	PGSC:PGSC0003DMG400022297
EnsemblPlants:PGSC0003DMT400057423	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	SMART:SM00397
InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0002950C6D	RefSeq:XP_006346179.1	:	:	:	:

Description

Syntaxin-51 [Source:PGSC_GENE;Acc:PGSC0003DMG400022297]

Coordinates

chr7:+:55181264..55186822

Molecular Weight (calculated)

25908.7 Da

IEP (calculated)

8.469

GRAVY (calculated)

-0.233

Length

233 amino acids

Sequence
(BLAST)

001: MASSGDSWIR EYNEGLKLAD DITNMISERS SLPASGPEAQ RHSSAIRRKI TILGTRLDNL QSILSKLPGK QPLSEKEMNR RKDMLANLKS KVSQMASTLN
101: MSSFANRDSL LGPEIKPVDA MSRATGLDNY GVVGLQRQIM KEQDEGLESL EETVMSTKHI ALAVNEELGL QTRLIDDLDE HVDVTDSRLQ RVQRKLGILN
201: KRTKGGCSCM CMLLAVLGIV LLVFAIYMLI KYL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.