Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- plasma membrane 3
- vacuole 3
- extracellular 2
- endoplasmic reticulum 2
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008425.1-P | Field mustard | cytosol | 82.58 | 93.16 |
| CDY49743 | Canola | cytosol | 82.58 | 93.16 |
| CDY68585 | Canola | cytosol | 81.06 | 90.68 |
| AT1G16240.1 | Thale cress | cytosol | 72.35 | 82.33 |
| Bra035128.1-P | Field mustard | cytosol | 78.41 | 75.55 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 63.64 | 73.68 |
| KRH14303 | Soybean | endoplasmic reticulum | 64.39 | 73.28 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 12.88 | 70.83 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 64.02 | 70.42 |
| Solyc07g065030.2.1 | Tomato | plastid | 55.3 | 69.86 |
| PGSC0003DMT400057423 | Potato | cytosol | 61.36 | 69.53 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 40.91 | 69.23 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 40.91 | 69.23 |
| KRG98671 | Soybean | endoplasmic reticulum | 65.15 | 68.53 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 18.94 | 68.49 |
| KXG27212 | Sorghum | cytosol | 56.82 | 64.94 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 56.44 | 64.5 |
| Os08t0277900-01 | Rice | plasma membrane | 56.06 | 63.79 |
| Zm00001d002148_P002 | Maize | cytosol | 55.68 | 63.64 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 55.68 | 63.09 |
| TraesCS5A01G062300.1 | Wheat | cytosol | 54.92 | 62.5 |
| TraesCS5B01G069400.1 | Wheat | cytosol | 54.92 | 62.5 |
| Os02t0119400-01 | Rice | plasma membrane | 54.55 | 62.07 |
| TraesCS6A01G059100.1 | Wheat | cytosol | 53.03 | 60.34 |
| TraesCSU01G121500.1 | Wheat | cytosol | 53.03 | 60.34 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 55.3 | 60.33 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 52.65 | 59.91 |
| Solyc12g014550.1.1 | Tomato | cytosol | 33.33 | 57.52 |
| TraesCS5D01G073500.2 | Wheat | cytosol | 54.92 | 56.2 |
| AT1G16230.1 | Thale cress | cytosol | 39.39 | 53.89 |
| KRH73827 | Soybean | plastid | 13.26 | 50.72 |
| AT1G16225.2 | Thale cress | cytosol | 40.91 | 48.43 |
| PGSC0003DMT400033466 | Potato | endoplasmic reticulum | 48.48 | 47.76 |
| HORVU6Hr1G011180.1 | Barley | mitochondrion | 52.27 | 45.7 |
| HORVU4Hr1G023890.1 | Barley | cytosol | 13.64 | 41.86 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 59.47 | 32.17 |
Protein Annotations
| Gene3D:1.20.5.110 | MapMan:22.7.4.1 | EntrezGene:844297 | UniProt:A0A1P8ARR3 | ProteinID:ANM59342.1 | ArrayExpress:AT1G79590 |
| EnsemblPlantsGene:AT1G79590 | RefSeq:AT1G79590 | TAIR:AT1G79590 | RefSeq:AT1G79590-TAIR-G | EnsemblPlants:AT1G79590.3 | Unigene:At.19840 |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_001321707.1 | PFAM:PF05739 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF149 | SMART:SM00397 | SUPFAM:SSF58038 |
| Symbol:SYP52 | InterPro:Syntaxin/epimorphin_CS | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0008493BE5 | SEG:seg |
Description
SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
Coordinates
chr1:+:29946474..29948807
Molecular Weight (calculated)
29741.1 Da
IEP (calculated)
8.475
GRAVY (calculated)
-0.209
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIADFGSQW LILFDSSFCF RRLIFFSTQQ SMASSSDPWM REYNEALKLS EDINGMMSER NASGLTGPDA QRRASAIRRK ITILGTRLDS LQSLLVKVPG
101: KQHVSEKEMN RRKDMVGNLR SKTNQVASAL NMSNFANRDS LFGTDLKPDD AINRVSGMDN QGIVVFQRQV MREQDEGLEK LEETVMSTKH IALAVNEELT
201: LQTRLIDDLD YDVDITDSRL RRVQKSLALM NKSMKSGCSC MSMLLSVLGI VGLALVIWLL VKYL
101: KQHVSEKEMN RRKDMVGNLR SKTNQVASAL NMSNFANRDS LFGTDLKPDD AINRVSGMDN QGIVVFQRQV MREQDEGLEK LEETVMSTKH IALAVNEELT
201: LQTRLIDDLD YDVDITDSRL RRVQKSLALM NKSMKSGCSC MSMLLSVLGI VGLALVIWLL VKYL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.