Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G062300.1 | Wheat | cytosol | 100.0 | 100.0 |
| HORVU5Hr1G016680.2 | Barley | cytosol, vacuole | 100.0 | 95.87 |
| KXG27212 | Sorghum | cytosol | 90.52 | 90.91 |
| Zm00001d050146_P001 | Maize | extracellular, mitochondrion | 89.66 | 90.04 |
| TraesCS5D01G073500.2 | Wheat | cytosol | 100.0 | 89.92 |
| Zm00001d002148_P002 | Maize | cytosol | 89.22 | 89.61 |
| Os08t0277900-01 | Rice | plasma membrane | 89.22 | 89.22 |
| TraesCS6B01G079400.1 | Wheat | cytosol | 81.03 | 81.03 |
| GSMUA_Achr6P34260_001 | Banana | cytosol | 70.69 | 70.39 |
| KRH46259 | Soybean | endoplasmic reticulum, mitochondrion | 68.1 | 69.3 |
| KRH14303 | Soybean | endoplasmic reticulum | 68.97 | 68.97 |
| VIT_00s0227g00170.t01 | Wine grape | mitochondrion | 46.12 | 68.59 |
| VIT_00s0582g00030.t01 | Wine grape | mitochondrion | 46.12 | 68.59 |
| VIT_00s1613g00010.t01 | Wine grape | cytosol | 21.12 | 67.12 |
| VIT_19s0090g01300.t01 | Wine grape | cytosol | 67.24 | 65.0 |
| CDY33349 | Canola | cytosol | 64.66 | 64.66 |
| VIT_00s2887g00010.t01 | Wine grape | cytosol | 13.36 | 64.58 |
| Bra026074.1-P | Field mustard | cytosol | 64.22 | 64.22 |
| CDY35073 | Canola | cytosol | 64.22 | 64.22 |
| KRG98671 | Soybean | endoplasmic reticulum | 69.4 | 64.14 |
| CDY52847 | Canola | cytosol | 64.22 | 63.95 |
| Bra026727.1-P | Field mustard | cytosol | 63.79 | 63.52 |
| Bra008425.1-P | Field mustard | cytosol | 63.79 | 63.25 |
| CDY49743 | Canola | cytosol | 63.79 | 63.25 |
| CDX81754 | Canola | cytosol | 63.36 | 63.09 |
| AT1G16240.1 | Thale cress | cytosol | 62.5 | 62.5 |
| CDY68585 | Canola | cytosol | 62.5 | 61.44 |
| PGSC0003DMT400072222 | Potato | cytosol | 60.34 | 60.61 |
| Solyc10g081060.1.1 | Tomato | plastid | 57.76 | 60.09 |
| AT1G79590.3 | Thale cress | golgi, plasma membrane | 62.5 | 54.92 |
| KRH73827 | Soybean | plastid | 15.95 | 53.62 |
| Bra035128.1-P | Field mustard | cytosol | 61.64 | 52.19 |
| AT1G16230.1 | Thale cress | cytosol | 40.52 | 48.7 |
| AT1G16225.2 | Thale cress | cytosol | 40.09 | 41.7 |
| TraesCS4B01G347500.1 | Wheat | plastid | 43.53 | 39.15 |
| GSMUA_Achr9P03240_001 | Banana | cytosol | 72.41 | 34.43 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G069400.1 | EnsemblPlantsGene:TraesCS5B01G069400 | Gene3D:1.20.5.110 | InterPro:IPR000727 | InterPro:T_SNARE_dom | ncoils:Coil |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF148 | PFAM:PF05739 | PFscan:PS50192 | SEG:seg | SMART:SM00397 |
| SUPFAM:SSF58038 | TIGR:cd15841 | TMHMM:TMhelix | MapMan:22.7.4.1 | : | : |
Description
No Description!
Coordinates
chr5B:+:79346508..79348646
Molecular Weight (calculated)
25912.6 Da
IEP (calculated)
9.232
GRAVY (calculated)
-0.225
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSDPWMK EYTEASKLVD DISSMIADRS SLPQSGPEIM RHTSAIRRKI TILGTRLDSL VTLLSRIPPK SLTDKEMHKR QDALSNLKSK AKQMGTSFNV
101: SNFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQVMR EQDEGLERLE ETVLSTKHIA LAVNEELTLH TRLIDDLEDH VDVTNSRLQR VQKRLAILNK
201: RAKGGCSCMC LMLSVAAIVL LAVIVWLLIK YL
101: SNFANREDLL GQSKKAADDM SRVAGLDNQG IVGLQRQVMR EQDEGLERLE ETVLSTKHIA LAVNEELTLH TRLIDDLEDH VDVTNSRLQR VQKRLAILNK
201: RAKGGCSCMC LMLSVAAIVL LAVIVWLLIK YL
001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL
Arabidopsis Description
SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.