CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX78905
CDX88803
CDX89333
CDX90156
CDX92368
CDX94330
CDX94628
CDX97739
CDX98596
CDX99411
CDY01565
CDY09128
CDY15661
CDY30157
CDY30816
CDY34096
CDY35676
CDY35752

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	CDX90156	AT1G28490.1	21798944
AT1G16240.1	CDX94628	AT1G28490.1	21798944
AT1G16240.1	CDY15661	AT1G28490.1	21798944
AT1G16240.1	CDY30816	AT1G28490.1	21798944
AT1G16240.1	CDY34096	AT1G28490.1	21798944
AT1G16240.1	CDY35752	AT1G28490.1	21798944
AT1G16240.1	CDX97739	AT3G16310.1	21798944
AT1G16240.1	CDY30157	AT3G16310.1	21798944
AT1G16240.1	CDX78905	AT4G19030.1	21798944
AT1G16240.1	CDX98596	AT4G19030.1	21798944
AT1G16240.1	CDX99411	AT4G19030.1	21798944
AT1G16240.1	CDY01565	AT4G19030.1	21798944
AT1G16240.1	CDX89333	AT4G26455.1	21798944
AT1G16240.1	CDX94330	AT4G26455.1	21798944
AT1G16240.1	CDX70995	AT5G22290.1	21798944
AT1G16240.1	CDX88803	AT5G22290.1	21798944
AT1G16240.1	CDX92368	AT5G22290.1	21798944
AT1G16240.1	CDY09128	AT5G22290.1	21798944
AT1G16240.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52847	Canola	cytosol	96.57	96.57
CDY35073	Canola	cytosol	94.85	95.26
CDY33349	Canola	cytosol	93.99	94.4
AT1G16240.1	Thale cress	cytosol	88.41	88.79
CDY49743	Canola	cytosol	84.55	84.19
CDY68585	Canola	cytosol	83.69	82.63
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	74.68	76.32
KRH14303	Soybean	endoplasmic reticulum	75.11	75.43
Solyc07g065030.2.1	Tomato	plastid	63.95	71.29
PGSC0003DMT400057423	Potato	cytosol	71.24	71.24
VIT_00s0227g00170.t01	Wine grape	mitochondrion	47.64	71.15
VIT_00s0582g00030.t01	Wine grape	mitochondrion	47.64	71.15
VIT_19s0090g01300.t01	Wine grape	cytosol	72.53	70.42
KRG98671	Soybean	endoplasmic reticulum	75.11	69.72
VIT_00s1613g00010.t01	Wine grape	cytosol	21.46	68.49
VIT_00s2887g00010.t01	Wine grape	cytosol	13.73	66.67
KXG27212	Sorghum	cytosol	64.81	65.37
Zm00001d002148_P002	Maize	cytosol	64.38	64.94
Zm00001d050146_P001	Maize	extracellular, mitochondrion	64.38	64.94
Os08t0277900-01	Rice	plasma membrane	63.52	63.79
TraesCS5B01G069400.1	Wheat	cytosol	63.09	63.36
TraesCS5A01G062300.1	Wheat	cytosol	63.09	63.36
Os02t0119400-01	Rice	plasma membrane	62.66	62.93
GSMUA_Achr6P34260_001	Banana	cytosol	62.23	62.23
TraesCS6A01G059100.1	Wheat	cytosol	61.8	62.07
TraesCS6B01G079400.1	Wheat	cytosol	61.37	61.64
TraesCSU01G121500.1	Wheat	cytosol	60.94	61.21
HORVU5Hr1G016680.2	Barley	cytosol, vacuole	63.09	60.74
Solyc12g014550.1.1	Tomato	cytosol	38.2	58.17
AT1G16230.1	Thale cress	cytosol	48.07	58.03
TraesCS5D01G073500.2	Wheat	cytosol	63.09	56.98
KRH73827	Soybean	plastid	16.31	55.07
AT1G16225.2	Thale cress	cytosol	48.07	50.22
HORVU6Hr1G011180.1	Barley	mitochondrion	60.52	46.69
PGSC0003DMT400033466	Potato	endoplasmic reticulum	53.65	46.64
HORVU4Hr1G023890.1	Barley	cytosol	14.59	39.53
GSMUA_Achr9P03240_001	Banana	cytosol	65.24	31.15

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	GO:A0A078D0I7	EnsemblPlants:CDX81754	ProteinID:CDX81754	ProteinID:CDX81754.1
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	GO:GO:0061025
EnsemblPlantsGene:GSBRNA2T00136687001	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF149	SMART:SM00397	SUPFAM:SSF58038	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0004EE14D4	SEG:seg	:	:	:	:

Description

BnaC08g38470D

Coordinates

chrLK031826:-:626419..628010

Molecular Weight (calculated)

26226.9 Da

IEP (calculated)

9.149

GRAVY (calculated)

-0.332

Length

233 amino acids

Sequence
(BLAST)

001: MASSSDSWMR EYNEALKLAE DINGMMISER SKSAVTGPDA QRRASAIRRK ITIFGTRLDS LQSLLAKIHG KPISEKEMNR RKDMIGNLRS QANQMANTLN
101: MSNFANRDSL LGSEIKPDDT LSRVSSMDNQ GIVGFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELGL QTRLIDDLDY HVEVTDSRLR RVQKNLAVMN
201: KNMRSGCSCM SMLLSMLGIV GLAVVIWLLV KYL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.