Factsheet for PGSC0003DMT400033466

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 2
endoplasmic reticulum 3
vacuole 3
extracellular 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006495
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400039964
PGSC0003DMT400050482
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	PGSC0003DMT400039964	AT1G28490.1	21798944
AT1G16240.1	PGSC0003DMT400006495	AT3G16310.1	21798944
AT1G16240.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G16240.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G16240.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G16240.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT1G16240.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G16240.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014550.1.1	Tomato	cytosol	47.01	82.35
VIT_00s2887g00010.t01	Wine grape	cytosol	12.69	70.83
VIT_00s1613g00010.t01	Wine grape	cytosol	17.91	65.75
PGSC0003DMT400057423	Potato	cytosol	55.97	64.38
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	50.75	59.65
KRH14303	Soybean	endoplasmic reticulum	50.37	58.19
CDY49743	Canola	cytosol	48.51	55.56
Bra008425.1-P	Field mustard	cytosol	48.51	55.56
CDY68585	Canola	cytosol	48.51	55.08
CDY33349	Canola	cytosol	47.39	54.74
CDY35073	Canola	cytosol	47.39	54.74
Bra026074.1-P	Field mustard	cytosol	47.39	54.74
KRG98671	Soybean	endoplasmic reticulum	50.75	54.18
CDY52847	Canola	cytosol	47.01	54.08
Bra026727.1-P	Field mustard	cytosol	47.01	54.08
CDX81754	Canola	cytosol	46.64	53.65
AT1G16240.1	Thale cress	cytosol	44.78	51.72
PGSC0003DMT400072222	Potato	cytosol	42.91	49.78
AT1G79590.3	Thale cress	golgi, plasma membrane	47.76	48.48
Bra035128.1-P	Field mustard	cytosol	48.88	47.81
AT1G16230.1	Thale cress	cytosol	33.96	47.15
AT1G16225.2	Thale cress	cytosol	31.34	37.67
KRH73827	Soybean	plastid	2.24	8.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400033466	EnsemblPlantsGene:PGSC0003DMG400012856	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000727	InterPro:T_SNARE_dom	PANTHER:PTHR19957	PANTHER:PTHR19957:SF149	PFscan:PS50192	PGSC:PGSC0003DMG400012856
SEG:seg	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI000296A05F	UniProt:M1AZ73	MapMan:22.7.4.1

Description

Syntaxin-52 [Source:PGSC_GENE;Acc:PGSC0003DMG400012856]

Coordinates

chr12:+:9563547..9565995

Molecular Weight (calculated)

29572.9 Da

IEP (calculated)

4.684

GRAVY (calculated)

0.091

Length

268 amino acids

Sequence
(BLAST)

001: MVVLGSSDLL FSSASSSVCS CQLFLQYELS ALESFLIDGY VGNLVLLFYL LFSCLLSGAL LIVSLGRVGG VKGMVAFGDS WIQEYNEAGK LADDIIYMIS
101: ERNLLPATGP EAQRHSSLIR RKITILGFRL DILQSIDSKL PGKQHLTEKE MNRRKDMLAN LKSKAAEMAS TLNMSNFANR DSLLGPETKA ADATSRTTGL
201: DNYGVVEQDE GLEKLEESMM SFKHIALAVN EELDLQTRLI ATLDEHVDVT DSRLQVTILL LLQQLMQS

Best Arabidopsis Sequence Match ( AT1G79590.1 )
(BLAST)

001: MASSSDPWMR EYNEALKLSE DINGMMSERN ASGLTGPDAQ RRASAIRRKI TILGTRLDSL QSLLVKVPGK QHVSEKEMNR RKDMVGNLRS KTNQVASALN
101: MSNFANRDSL FGTDLKPDDA INRVSGMDNQ GIVVFQRQVM REQDEGLEKL EETVMSTKHI ALAVNEELTL QTRLIDDLDY DVDITDSRLR RVQKSLALMN
201: KSMKSGCSCM SMLLSVLGIV GLALVIWLLV KYL

Arabidopsis Description

SYP52syntaxin of plants 52 [Source:TAIR;Acc:AT1G79590]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.