Factsheet for Solyc07g065030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 1
cytosol 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc06g074170.2.1
Solyc07g066170.2.1
Solyc11g068750.1.1
Solyc12g089150.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16240.1	Solyc12g089150.1.1	AT1G28490.1	21798944
AT1G16240.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT1G16240.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G16240.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G16240.1	Solyc07g066170.2.1	AT4G26455.1	21798944
AT1G16240.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G16240.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057423	Potato	cytosol	98.56	88.41
VIT_00s2887g00010.t01	Wine grape	cytosol	19.14	83.33
KRH14303	Soybean	endoplasmic reticulum	82.3	74.14
KRH46259	Soybean	endoplasmic reticulum, mitochondrion	80.86	74.12
KRG98671	Soybean	endoplasmic reticulum	79.9	66.53
Bra026727.1-P	Field mustard	cytosol	73.68	66.09
CDY49743	Canola	cytosol	73.68	65.81
Bra008425.1-P	Field mustard	cytosol	73.68	65.81
CDY52847	Canola	cytosol	73.21	65.67
Solyc10g081060.1.1	Tomato	plastid	69.38	65.02
AT1G16240.1	Thale cress	cytosol	71.29	64.22
Solyc12g014550.1.1	Tomato	cytosol	46.89	64.05
CDY68585	Canola	cytosol	72.25	63.98
CDX81754	Canola	cytosol	71.29	63.95
CDY33349	Canola	cytosol	70.81	63.79
CDY35073	Canola	cytosol	70.81	63.79
Bra026074.1-P	Field mustard	cytosol	70.81	63.79
AT1G79590.3	Thale cress	golgi, plasma membrane	69.86	55.3
Bra035128.1-P	Field mustard	cytosol	70.81	54.01
VIT_00s1613g00010.t01	Wine grape	cytosol	18.66	53.42
KRH73827	Soybean	plastid	16.75	50.72
AT1G16230.1	Thale cress	cytosol	45.45	49.22
AT1G16225.2	Thale cress	cytosol	44.98	42.15

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.4.1	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	UniProt:K4CHI2
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF207	SMART:SM00397
SUPFAM:SSF58038	EnsemblPlantsGene:Solyc07g065030.2	EnsemblPlants:Solyc07g065030.2.1	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000276CA37	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:66966384..66969734

Molecular Weight (calculated)

23143.5 Da

IEP (calculated)

9.595

GRAVY (calculated)

-0.179

Length

209 amino acids

Sequence
(BLAST)

001: MISERSSLPA SGPEAQRHSS AIRRKITILG TRLDNLQSIL SKLPGKQPLS EKEMNRRKDM LANLKSKVSQ MASTLNMSSF ANRDSLLGPE IKPVDAMSRA
101: TGLDNNGVVG LQRQIMKEQD EGLESLEETV MSTKHIALAV NEELGLQTRL IDDLDEHVDV TDSRLQRVQR KLGILNKRTK GGCSCMCMLL AVLGIVILVV
201: AIYMLIKYL

Best Arabidopsis Sequence Match ( AT1G16240.2 )
(BLAST)

001: MASSSDSWMR AYNEALKLSE EINGMISERS SSAVTGPDAQ RRASAIRRKI TIFGNKLDSL QSLLAEIHGK PISEKEMNRR KDMVGNLRSK ANQMANALNM
101: SNFANRDSLL GPDIKPDDSM SRVTGMDNQG IVGYQRQVMR EQDEGLEQLE GTVMSTKHIA LAVSEELDLQ TRLIDDLDYH VDVTDSRLRR VQKSLAVMNK
201: NMRSGCSCMS MLLSVLGIVG LAVVIWMLVK YM

Arabidopsis Description

SYP51SYP51 [Source:UniProtKB/TrEMBL;Acc:A0A178WJ29]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.