Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46787 | Canola | cytosol | 97.1 | 97.1 |
| Bra022697.1-P | Field mustard | plastid | 88.38 | 80.68 |
| AT5G54110.1 | Thale cress | nucleus, plastid | 86.31 | 78.2 |
| KRH27165 | Soybean | plastid | 69.71 | 70.59 |
| KRH22167 | Soybean | plastid | 69.71 | 70.0 |
| Solyc12g005390.1.1 | Tomato | mitochondrion | 62.66 | 68.02 |
| PGSC0003DMT400048960 | Potato | mitochondrion | 62.24 | 67.26 |
| Solyc07g063630.2.1 | Tomato | plastid | 72.2 | 66.67 |
| VIT_19s0014g03740.t01 | Wine grape | nucleus, plastid | 70.54 | 64.39 |
| PGSC0003DMT400049547 | Potato | cytosol, plastid | 68.46 | 63.46 |
| Bra020894.1-P | Field mustard | nucleus | 62.24 | 54.55 |
| Bra013528.1-P | Field mustard | nucleus, plastid | 63.9 | 52.74 |
| Bra029550.1-P | Field mustard | plastid | 55.6 | 47.69 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra003015 | EnsemblPlants:Bra003015.1 | EnsemblPlants:Bra003015.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M4CFN3 | InterPro:MSP_dom |
| PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF58 | InterPro:PapD-like_sf | SUPFAM:SSF49354 |
| UniParc:UPI0002543CE4 | InterPro:VAP | SEG:seg | : | : | : |
Description
AT5G54110 (E=3e-097) ATMAMI | ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED); structural molecule
Coordinates
chrA10:+:6030566..6031861
Molecular Weight (calculated)
27507.2 Da
IEP (calculated)
10.515
GRAVY (calculated)
-0.635
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITDRQNPN AEEKKKLLFK LCPFFWQRRT TTASSSSKPS LARSILPARR RLRLDPSSYL YFPYEAGKQV RSAIKLKNTS KSHTAFKFQT TAPKSCYMRP
101: PGGVLAPGES VFATVFKFVE HPENNEKHKL NKKSKAKFKI MSLKVKPGVE FVPELFDEQK DQVIVERVLR VIFLDADRPS AALEKLTRQL EEAEAAVEVR
201: KKPPPETGPR VVGEGLVIDE WKERREKYLA RQQVDSIDSS S
101: PGGVLAPGES VFATVFKFVE HPENNEKHKL NKKSKAKFKI MSLKVKPGVE FVPELFDEQK DQVIVERVLR VIFLDADRPS AALEKLTRQL EEAEAAVEVR
201: KKPPPETGPR VVGEGLVIDE WKERREKYLA RQQVDSIDSS S
001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS
Arabidopsis Description
PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.