Factsheet for VIT_19s0014g03740.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22167	Soybean	plastid	69.32	76.25
KRH27165	Soybean	plastid	67.8	75.21
PGSC0003DMT400048960	Potato	mitochondrion	62.88	74.44
Solyc12g005390.1.1	Tomato	mitochondrion	62.12	73.87
Solyc07g063630.2.1	Tomato	plastid	72.35	73.18
VIT_12s0057g00200.t01	Wine grape	nucleus, plastid	69.32	70.66
Bra003015.1-P	Field mustard	cytosol	64.39	70.54
CDY46787	Canola	cytosol	64.39	70.54
CDY41776	Canola	plastid	70.08	70.34
AT5G54110.1	Thale cress	nucleus, plastid	70.08	69.55
Bra022697.1-P	Field mustard	plastid	69.32	69.32
CDY28793	Canola	plastid	69.32	69.32
PGSC0003DMT400049547	Potato	cytosol, plastid	67.05	68.08
VIT_00s0203g00040.t01	Wine grape	nucleus	67.05	67.05

Protein Annotations

EntrezGene:100243498	wikigene:100243498	Gene3D:2.60.40.10	MapMan:35.1	UniProt:A5ARH9	EMBL:AM433003
ProteinID:CAN60507	ProteinID:CAN60507.1	ProteinID:CBI20383	ProteinID:CBI20383.3	EMBL:FN595229	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005886
GO:GO:0006950	GO:GO:0006970	GO:GO:0008150	GO:GO:0009628	GO:GO:0016020	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100243498	wikigene:LOC100243498	InterPro:MSP_dom	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF58	InterPro:PapD-like_sf	SUPFAM:SSF49354	TIGR:TC61083
UniParc:UPI000151F389	InterPro:VAP	ArrayExpress:VIT_19s0014g03740	EnsemblPlantsGene:VIT_19s0014g03740	EnsemblPlants:VIT_19s0014g03740.t01	unigene:Vvi.6617
RefSeq:XP_002284424	RefSeq:XP_002284424.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:-:3851406..3854849

Molecular Weight (calculated)

30060.0 Da

IEP (calculated)

10.428

GRAVY (calculated)

-0.760

Length

264 amino acids

Sequence
(BLAST)

001: MGIADRRKPS SEGKLWRLCP FWQSGNGSPS SSSTQNFQQH KIRGRRHVDD TDTRSSPSKV SSVARSFLPT RRRLRLDPAN NLYFPYEPGK QVKSAVRMKN
101: TSRSHVAFKF QTTAPKSCYM RPPGGILAPG ESIIATVFKF MEHPENNEKN EKQLDQKSNV KFKIMSLKVK AGMDYVPELF DEQKEKVSVE RILHVVFLDV
201: ERPSPALEKL KRQLAEAEAA VEARKKPPPE IGPRVIGEGL VIDEWKERRE KYLAQQQVEA VDSV

Best Arabidopsis Sequence Match ( AT5G54110.1 )
(BLAST)

001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS

Arabidopsis Description

PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.