CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28793	Canola	plastid	89.73	89.39
CDY46787	Canola	cytosol	80.61	87.97
AT5G54110.1	Thale cress	nucleus, plastid	80.99	80.08
KRH27165	Soybean	plastid	66.54	73.53
KRH22167	Soybean	plastid	65.78	72.08
VIT_19s0014g03740.t01	Wine grape	nucleus, plastid	70.34	70.08
Solyc12g005390.1.1	Tomato	mitochondrion	58.56	69.37
Solyc07g063630.2.1	Tomato	plastid	68.44	68.97
PGSC0003DMT400048960	Potato	mitochondrion	58.17	68.61
PGSC0003DMT400049547	Potato	cytosol, plastid	63.88	64.62
CDY44751	Canola	nucleus	53.61	58.51
CDX76427	Canola	nucleus	60.08	56.03
CDX79064	Canola	nucleus, plastid	60.46	55.99
CDY47093	Canola	nucleus	60.08	55.44
CDX82825	Canola	nucleus, plastid	60.84	54.98
CDY71216	Canola	nucleus, plastid	55.13	51.6

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	GO:A0A078HVM1	UniProt:A0A078HVM1	EnsemblPlants:CDY41776	ProteinID:CDY41776
ProteinID:CDY41776.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:GSBRNA2T00073652001	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF58
InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI0004EF2CA1	InterPro:VAP	SEG:seg	:

Description

BnaC02g13800DBnaC02g13800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVM1]

Coordinates

chrLK032506:+:42739..44408

Molecular Weight (calculated)

29944.7 Da

IEP (calculated)

10.728

GRAVY (calculated)

-0.765

Length

263 amino acids

Sequence
(BLAST)

001: MAITDRQNPR AETKSLFRLF PFWQRRTTAS SSPPSSTQNQ PGRHRNRNTD VSKRSSALSI SSVARSILPA RRRLRLDPSS YLYFPYEPGK QVRSAIKLKN
101: TSKSHTAFKF QTTAPKSCYM RPPGGVLAPG ESAFATVFKF VEHPENNEKQ QLNQKSKAKF KIMSLKVKPG VEFVPELFDE QKDQVTVERV LRVIFLDAER
201: PSAALEKLKR QLDEAEAAVE ERKKPLPETG PRVVGEGLVI DEWKERREKY LARQQVEAID SSS

Best Arabidopsis Sequence Match ( AT5G54110.1 )
(BLAST)

001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS

Arabidopsis Description

PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.