Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71216 | Canola | nucleus, plastid | 81.33 | 69.75 |
| Bra029550.1-P | Field mustard | plastid | 80.5 | 69.04 |
| KRH21581 | Soybean | plastid | 52.28 | 67.74 |
| AT4G05060.1 | Thale cress | nucleus, plastid | 79.67 | 66.9 |
| Zm00001d049598_P001 | Maize | plastid | 59.34 | 62.72 |
| Os08t0141300-01 | Rice | plasma membrane | 60.58 | 62.66 |
| Zm00001d024661_P001 | Maize | cytosol | 58.92 | 62.01 |
| TraesCS7A01G306700.2 | Wheat | cytosol | 58.92 | 62.01 |
| TraesCS7B01G207000.2 | Wheat | cytosol | 58.51 | 61.57 |
| HORVU7Hr1G073060.2 | Barley | plastid | 57.68 | 60.7 |
| EES13332 | Sorghum | plastid | 58.51 | 60.0 |
| TraesCS7D01G303600.2 | Wheat | cytosol | 58.51 | 59.75 |
| CDX76427 | Canola | nucleus | 69.71 | 59.57 |
| Solyc02g079230.2.1 | Tomato | nucleus, plastid | 65.98 | 59.55 |
| PGSC0003DMT400057560 | Potato | nucleus | 65.98 | 59.55 |
| CDX79064 | Canola | nucleus, plastid | 70.12 | 59.51 |
| GSMUA_Achr3P22970_001 | Banana | nucleus | 63.9 | 59.0 |
| CDY47093 | Canola | nucleus | 69.71 | 58.95 |
| VIT_00s0203g00040.t01 | Wine grape | nucleus | 64.32 | 58.71 |
| KRH49936 | Soybean | nucleus | 65.15 | 58.36 |
| CDX82825 | Canola | nucleus, plastid | 70.12 | 58.08 |
| KRH41939 | Soybean | nucleus | 64.32 | 57.84 |
| GSMUA_Achr8P33100_001 | Banana | nucleus | 64.73 | 57.78 |
| CDY46787 | Canola | cytosol | 56.85 | 56.85 |
| KRH10748 | Soybean | cytosol | 60.17 | 56.64 |
| Zm00001d049833_P001 | Maize | plastid | 35.27 | 54.84 |
| GSMUA_Achr4P23830_001 | Banana | cytosol | 61.0 | 54.44 |
| TraesCS2A01G206000.1 | Wheat | nucleus | 61.41 | 54.41 |
| TraesCS2D01G210100.1 | Wheat | cytosol | 61.41 | 54.41 |
| TraesCS2B01G233200.1 | Wheat | nucleus | 61.0 | 54.04 |
| HORVU2Hr1G041130.3 | Barley | nucleus | 61.0 | 53.85 |
| CDY41776 | Canola | plastid | 58.51 | 53.61 |
| CDY28793 | Canola | plastid | 58.09 | 53.03 |
| Os07t0558800-01 | Rice | plasma membrane | 60.58 | 51.41 |
| EER97373 | Sorghum | nucleus | 57.68 | 50.18 |
| GSMUA_Achr11P... | Banana | cytosol | 47.72 | 40.21 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 21.58 | 33.77 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | GO:A0A078I4E7 | UniProt:A0A078I4E7 | EnsemblPlants:CDY44751 | ProteinID:CDY44751 |
| ProteinID:CDY44751.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00080739001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF46 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | UniParc:UPI0004EE5805 | InterPro:VAP | SEG:seg | : | : |
Description
BnaC09g22290DBnaC09g22290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4E7]
Coordinates
chrLK032600:-:156920..158584
Molecular Weight (calculated)
27218.8 Da
IEP (calculated)
9.469
GRAVY (calculated)
-0.654
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MADVEAYSNY PFETPGPRPV VERLGQTHHQ QPAATIPSMS SVARSLLPSK RRLKLDPSSK LYFPYEPGKQ VRSAIKIKNT SKSHVAFKFQ TTEPKSCFMR
101: PAGAILPPGE EILATVFKFV EPPQNNEKPM EQKSGVKFKI MSLKIKIPTD YMPELFEEQK DHVSEEQVMR VVFLDPENPN PMMEKLKSQL AEADAADEAR
201: KKAPDVISTG PKPIGEGLVI DEWKQRRERY LAQQQKGVDL A
101: PAGAILPPGE EILATVFKFV EPPQNNEKPM EQKSGVKFKI MSLKIKIPTD YMPELFEEQK DHVSEEQVMR VVFLDPENPN PMMEKLKSQL AEADAADEAR
201: KKAPDVISTG PKPIGEGLVI DEWKQRRERY LAQQQKGVDL A
001: MALTEDKSDS DGRRWGKFKL PFRNSNSQAP SASSSSSMAT SSSSVTSSHL NQNYIHQSRH FQYHGPPVVE GLGQNHHQSA ATIPSMSSVA RSLLPTKRRL
101: KLDPSAKLYF PYEPGKQVRS AIKIKNTSKS HVAFKFQTTV PKSCFMRPAG AILAPGEEII ATVFKFVEPP ENNEKPMEQK SGVKFKIMSL KMKVPTDYMP
201: ELFEEQKDHV SEEQVMRVVF LDPENPNSMM EKLKSQLAEA DAADEARKKA SEGIVGPKPI GEGLVIDEWK QRRERYLAQQ QGGVDAA
101: KLDPSAKLYF PYEPGKQVRS AIKIKNTSKS HVAFKFQTTV PKSCFMRPAG AILAPGEEII ATVFKFVEPP ENNEKPMEQK SGVKFKIMSL KMKVPTDYMP
201: ELFEEQKDHV SEEQVMRVVF LDPENPNSMM EKLKSQLAEA DAADEARKKA SEGIVGPKPI GEGLVIDEWK QRRERYLAQQ QGGVDAA
Arabidopsis Description
PVA43Vesicle-associated protein 4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPQ7]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.