CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41939	Soybean	nucleus	94.8	95.15
KRH21581	Soybean	plastid	55.39	80.11
VIT_00s0203g00040.t01	Wine grape	nucleus	75.84	77.27
KRH10748	Soybean	cytosol	70.26	73.83
Solyc02g079230.2.1	Tomato	nucleus, plastid	72.86	73.41
PGSC0003DMT400057560	Potato	nucleus	72.49	73.03
HORVU7Hr1G073060.2	Barley	plastid	60.97	71.62
Zm00001d049598_P001	Maize	plastid	60.59	71.49
TraesCS7B01G207000.2	Wheat	cytosol	60.59	71.18
Zm00001d024661_P001	Maize	cytosol	60.22	70.74
TraesCS7A01G306700.2	Wheat	cytosol	60.22	70.74
EES13332	Sorghum	plastid	60.97	69.79
Os08t0141300-01	Rice	plasma membrane	60.22	69.53
KRH22167	Soybean	plastid	61.71	69.17
TraesCS7D01G303600.2	Wheat	cytosol	60.59	69.07
Bra020894.1-P	Field mustard	nucleus	69.89	68.36
CDX76427	Canola	nucleus	71.38	68.09
CDX82825	Canola	nucleus, plastid	72.86	67.35
KRH26895	Soybean	nucleus	65.8	67.3
KRH56041	Soybean	nucleus, plastid	67.66	67.16
CDY47093	Canola	nucleus	71.0	67.02
CDX79064	Canola	nucleus, plastid	70.63	66.9
KRH27165	Soybean	plastid	59.11	66.81
Bra013528.1-P	Field mustard	nucleus, plastid	72.12	66.44
KRH22454	Soybean	nucleus	64.68	65.66
CDY44751	Canola	nucleus	58.36	65.15
GSMUA_Achr3P22970_001	Banana	nucleus	63.2	65.13
KRH25486	Soybean	nucleus, plastid	56.88	65.11
GSMUA_Achr4P23830_001	Banana	cytosol	64.68	64.44
GSMUA_Achr8P33100_001	Banana	nucleus	64.31	64.07
HORVU2Hr1G041130.3	Barley	nucleus	64.31	63.37
TraesCS2D01G210100.1	Wheat	cytosol	63.94	63.24
TraesCS2A01G206000.1	Wheat	nucleus	63.94	63.24
TraesCS2B01G233200.1	Wheat	nucleus	63.94	63.24
AT4G21450.3	Thale cress	nucleus	71.75	61.47
Os07t0558800-01	Rice	plasma membrane	64.68	61.27
AT4G05060.1	Thale cress	nucleus, plastid	65.06	60.98
CDY71216	Canola	nucleus, plastid	63.57	60.85
Zm00001d049833_P001	Maize	plastid	34.94	60.65
Bra029550.1-P	Field mustard	plastid	62.83	60.14
EER97373	Sorghum	nucleus	61.71	59.93
GSMUA_Achr11P...	Banana	cytosol	51.3	48.25
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	26.39	46.1

Protein Annotations

EntrezGene:100808835	Gene3D:2.60.40.10	MapMan:35.1	EMBL:ACUP02004648	EnsemblPlantsGene:GLYMA_07G189400	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
UniProt:I1KLC4	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KRH49936	ProteinID:KRH49936
ProteinID:KRH49936.1	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48
InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI0002337EDD	InterPro:VAP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:+:35695105..35699563

Molecular Weight (calculated)

30284.1 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.633

Length

269 amino acids

Sequence
(BLAST)

001: MAVADPKPHS EPKVWNFFKL PFRHSAATNT TPSSANLHHL HHHHNHHHHH HNPNNLPLEG STSHTSNSVS SVARSLLPTR RRLKLDPSNK LYFPYEPGKQ
101: VRSAIRIKNT SKSSVAFKFQ TTAPKSCFMR PPGAILAPGE SIIATVFKFV EQPENNEKPE KSGLKFKIMS LKVKGSIDYV PELFDEQKDQ VAVEQILRVV
201: FLDPERPCPA LEKLNRQLAD ADAALEARKK PAEDAGPKII GEGLVIDEWK ERRERYLAKQ QGEVVVDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.