Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79064 | Canola | nucleus, plastid | 83.76 | 92.61 |
| Bra013528.1-P | Field mustard | nucleus, plastid | 85.67 | 92.12 |
| CDX82825 | Canola | nucleus, plastid | 85.35 | 92.1 |
| Bra020894.1-P | Field mustard | nucleus | 79.62 | 90.91 |
| CDX76427 | Canola | nucleus | 80.25 | 89.36 |
| CDY47093 | Canola | nucleus | 79.94 | 88.07 |
| KRH21581 | Soybean | plastid | 44.59 | 75.27 |
| Solyc02g079230.2.1 | Tomato | nucleus, plastid | 63.38 | 74.53 |
| PGSC0003DMT400057560 | Potato | nucleus | 63.06 | 74.16 |
| VIT_00s0203g00040.t01 | Wine grape | nucleus | 61.15 | 72.73 |
| KRH49936 | Soybean | nucleus | 61.47 | 71.75 |
| TraesCS7A01G306700.2 | Wheat | cytosol | 52.23 | 71.62 |
| TraesCS7B01G207000.2 | Wheat | cytosol | 51.91 | 71.18 |
| KRH41939 | Soybean | nucleus | 60.19 | 70.52 |
| Zm00001d049598_P001 | Maize | plastid | 50.96 | 70.18 |
| HORVU7Hr1G073060.2 | Barley | plastid | 50.96 | 69.87 |
| Os08t0141300-01 | Rice | plasma membrane | 51.59 | 69.53 |
| TraesCS7D01G303600.2 | Wheat | cytosol | 51.91 | 69.07 |
| Zm00001d024661_P001 | Maize | cytosol | 50.32 | 69.0 |
| EES13332 | Sorghum | plastid | 50.96 | 68.09 |
| GSMUA_Achr8P33100_001 | Banana | nucleus | 57.01 | 66.3 |
| KRH10748 | Soybean | cytosol | 53.82 | 66.02 |
| GSMUA_Achr4P23830_001 | Banana | cytosol | 56.69 | 65.93 |
| AT4G05060.1 | Thale cress | nucleus, plastid | 59.87 | 65.51 |
| GSMUA_Achr3P22970_001 | Banana | nucleus | 53.82 | 64.75 |
| HORVU2Hr1G041130.3 | Barley | nucleus | 55.1 | 63.37 |
| TraesCS2A01G206000.1 | Wheat | nucleus | 54.78 | 63.24 |
| TraesCS2B01G233200.1 | Wheat | nucleus | 54.78 | 63.24 |
| TraesCS2D01G210100.1 | Wheat | cytosol | 54.78 | 63.24 |
| Os07t0558800-01 | Rice | plasma membrane | 56.37 | 62.32 |
| EER97373 | Sorghum | nucleus | 54.78 | 62.09 |
| Zm00001d049833_P001 | Maize | plastid | 30.57 | 61.94 |
| AT5G54110.1 | Thale cress | nucleus, plastid | 50.32 | 59.4 |
| GSMUA_Achr11P... | Banana | cytosol | 40.45 | 44.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 21.02 | 42.86 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | EntrezGene:826300 | ProteinID:AEE84455.1 | ArrayExpress:AT4G21450 | EnsemblPlantsGene:AT4G21450 |
| RefSeq:AT4G21450 | TAIR:AT4G21450 | RefSeq:AT4G21450-TAIR-G | EnsemblPlants:AT4G21450.3 | TAIR:AT4G21450.3 | Unigene:At.28664 |
| UniProt:F4JJI7 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | RefSeq:NP_001190786.1 | PFAM:PF00635 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF48 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | UniParc:UPI0001E92F30 | InterPro:VAP |
| SEG:seg | : | : | : | : | : |
Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
Coordinates
chr4:+:11425957..11428386
Molecular Weight (calculated)
35189.5 Da
IEP (calculated)
9.941
GRAVY (calculated)
-0.821
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPW FVSEDLRSID TSLKFLSFNE PGKQVRSAIK IKNTSKSHVA FKFQTTAPKS CFMRPPGAIL APGETIIATV FKFVEPPENN
201: EKPMDQRSRV KFKIMSLKVK GPMDYVPELF DEQKDDVSKE QILRVIFLDP ERSNPALEKL KRQLAEADAA VEARKKPPEE TGPKMIGEGL VIDEWKERRE
301: RYLAQQQGEG ADSV
101: FLPTKRRLKL DPSEKLYFPW FVSEDLRSID TSLKFLSFNE PGKQVRSAIK IKNTSKSHVA FKFQTTAPKS CFMRPPGAIL APGETIIATV FKFVEPPENN
201: EKPMDQRSRV KFKIMSLKVK GPMDYVPELF DEQKDDVSKE QILRVIFLDP ERSNPALEKL KRQLAEADAA VEARKKPPEE TGPKMIGEGL VIDEWKERRE
301: RYLAQQQGEG ADSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.