Factsheet for Zm00001d049598_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024661_P001	Maize	cytosol	97.37	96.94
Zm00001d049833_P001	Maize	plastid	61.4	90.32
EES13332	Sorghum	plastid	92.54	89.79
Os08t0141300-01	Rice	plasma membrane	87.72	85.84
TraesCS7B01G207000.2	Wheat	cytosol	82.89	82.53
TraesCS7A01G306700.2	Wheat	cytosol	82.89	82.53
HORVU7Hr1G073060.2	Barley	plastid	82.46	82.1
TraesCS7D01G303600.2	Wheat	cytosol	82.89	80.08
KRH21581	Soybean	plastid	59.21	72.58
GSMUA_Achr3P22970_001	Banana	nucleus	76.75	67.05
VIT_00s0203g00040.t01	Wine grape	nucleus	77.19	66.67
GSMUA_Achr8P33100_001	Banana	nucleus	78.07	65.93
PGSC0003DMT400057560	Potato	nucleus	73.68	62.92
Solyc02g079230.2.1	Tomato	nucleus, plastid	73.68	62.92
KRH49936	Soybean	nucleus	71.49	60.59
KRH41939	Soybean	nucleus	71.05	60.45
CDY44751	Canola	nucleus	62.72	59.34
KRH10748	Soybean	cytosol	65.35	58.2
Bra020894.1-P	Field mustard	nucleus	70.18	58.18
CDX76427	Canola	nucleus	70.18	56.74
CDX79064	Canola	nucleus, plastid	70.61	56.69
CDY47093	Canola	nucleus	70.18	56.14
CDX82825	Canola	nucleus, plastid	71.05	55.67
Bra013528.1-P	Field mustard	nucleus, plastid	71.05	55.48
AT4G05060.1	Thale cress	nucleus, plastid	65.35	51.92
CDY71216	Canola	nucleus, plastid	63.6	51.6
AT4G21450.3	Thale cress	nucleus	70.18	50.96
Bra029550.1-P	Field mustard	plastid	62.72	50.89
GSMUA_Achr11P...	Banana	cytosol	58.77	46.85
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.37	33.12

Protein Annotations

EntrezGene:100273294	Gene3D:2.60.40.10	MapMan:35.1	ProteinID:AQK50864.1	ProteinID:AQK50865.1	UniProt:B4FUC2
EMBL:BT040710	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom
PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf	SUPFAM:SSF49354
UniParc:UPI00017B7613	InterPro:VAP	EnsemblPlantsGene:Zm00001d049598	EnsemblPlants:Zm00001d049598_P001	EnsemblPlants:Zm00001d049598_T001	SEG:seg

Description

Vesicle-associated protein 4-2

Coordinates

chr4:-:36838187..36840727

Molecular Weight (calculated)

25280.6 Da

IEP (calculated)

10.154

GRAVY (calculated)

-0.455

Length

228 amino acids

Sequence
(BLAST)

001: MPLWGAAASA APAADGDAAR APSGSGGGVK VIRSLLPTRR RLRLDPPAKL YFPYEPGKQV RSAVRIKNIS KSHVAFKFQT TAPKSCFMRP PGGVLAPGES
101: IIATVFKFVE HPENNEKPMD KCKVKFKIVS LKVKGPVEYV PELFDEQKDQ VAVEQILRVV FLDAERPSPQ MDKLKRQLAE AEAALEARKK PPEDNGPRIV
201: GEGLVIDEWK ERRERYLARQ QIEGVDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.