Factsheet for Bra029550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71216	Canola	nucleus, plastid	96.8	96.8
CDY44751	Canola	nucleus	69.04	80.5
AT4G05060.1	Thale cress	nucleus, plastid	77.58	75.96
KRH21581	Soybean	plastid	44.84	67.74
Bra020894.1-P	Field mustard	nucleus	64.77	66.18
PGSC0003DMT400057560	Potato	nucleus	61.21	64.42
Solyc02g079230.2.1	Tomato	nucleus, plastid	61.21	64.42
Bra013528.1-P	Field mustard	nucleus, plastid	66.55	64.04
VIT_00s0203g00040.t01	Wine grape	nucleus	59.43	63.26
TraesCS7A01G306700.2	Wheat	cytosol	51.25	62.88
KRH49936	Soybean	nucleus	60.14	62.83
Zm00001d049598_P001	Maize	plastid	50.89	62.72
KRH41939	Soybean	nucleus	59.79	62.69
TraesCS7B01G207000.2	Wheat	cytosol	50.89	62.45
Os08t0141300-01	Rice	plasma membrane	51.6	62.23
Zm00001d024661_P001	Maize	cytosol	50.53	62.01
HORVU7Hr1G073060.2	Barley	plastid	49.82	61.14
TraesCS7D01G303600.2	Wheat	cytosol	50.89	60.59
EES13332	Sorghum	plastid	50.53	60.43
GSMUA_Achr3P22970_001	Banana	nucleus	55.87	60.15
GSMUA_Achr8P33100_001	Banana	nucleus	57.3	59.63
KRH10748	Soybean	cytosol	54.09	59.38
GSMUA_Achr4P23830_001	Banana	cytosol	55.16	57.41
TraesCS2A01G206000.1	Wheat	nucleus	54.09	55.88
TraesCS2B01G233200.1	Wheat	nucleus	54.09	55.88
TraesCS2D01G210100.1	Wheat	cytosol	54.09	55.88
Bra003015.1-P	Field mustard	cytosol	47.69	55.6
HORVU2Hr1G041130.3	Barley	nucleus	53.38	54.95
Bra022697.1-P	Field mustard	plastid	51.6	54.92
Zm00001d049833_P001	Maize	plastid	30.25	54.84
Os07t0558800-01	Rice	plasma membrane	53.38	52.82
EER97373	Sorghum	nucleus	50.89	51.62
GSMUA_Achr11P...	Banana	cytosol	44.13	43.36
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.78	41.56

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EnsemblPlantsGene:Bra029550	EnsemblPlants:Bra029550.1	EnsemblPlants:Bra029550.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4EL83	InterPro:MSP_dom	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF46	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI000254261B
InterPro:VAP	SEG:seg	:	:	:	:

Description

AT4G05060 (E=1e-115) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA09:+:17129793..17131508

Molecular Weight (calculated)

31738.9 Da

IEP (calculated)

10.168

GRAVY (calculated)

-0.756

Length

281 amino acids

Sequence
(BLAST)

001: MALTSGKSDS DGRRRSLFKL PFRNSSDHQA TSSSSSSSSH LSDNYIHQSR HFRYQGPRPV VERLGQTHRQ QPAATIPSMS SVARSILPTK RRLKLDPSSK
101: LYFPYEPEKQ VRSAIKIKNT SKSHVAFKFQ TTEPKSCFMR PAGAILHPGA EIVATVFKFV EPPENNEKPM EQKSGVKFKI MSLKMKVPTD YMPELFEEQK
201: DHVSEEQVMR VVFLDPENPN PMMEKLKSQL AEADAADEAR KKAPEVISSG PKPIGEGLVI DEWKQRRERY LAQQQGGVDL A

Best Arabidopsis Sequence Match ( AT4G05060.1 )
(BLAST)

001: MALTEDKSDS DGRRWGKFKL PFRNSNSQAP SASSSSSMAT SSSSVTSSHL NQNYIHQSRH FQYHGPPVVE GLGQNHHQSA ATIPSMSSVA RSLLPTKRRL
101: KLDPSAKLYF PYEPGKQVRS AIKIKNTSKS HVAFKFQTTV PKSCFMRPAG AILAPGEEII ATVFKFVEPP ENNEKPMEQK SGVKFKIMSL KMKVPTDYMP
201: ELFEEQKDHV SEEQVMRVVF LDPENPNSMM EKLKSQLAEA DAADEARKKA SEGIVGPKPI GEGLVIDEWK QRRERYLAQQ QGGVDAA

Arabidopsis Description

PVA43Vesicle-associated protein 4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPQ7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.