Factsheet for TraesCS2D01G210100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G206000.1	Wheat	nucleus	99.26	99.26
TraesCS2B01G233200.1	Wheat	nucleus	98.53	98.53
HORVU2Hr1G041130.3	Barley	nucleus	91.91	91.58
EER97373	Sorghum	nucleus	84.56	83.03
Os07t0558800-01	Rice	plasma membrane	82.35	78.87
KRH21581	Soybean	plastid	48.53	70.97
TraesCS7D01G303600.2	Wheat	cytosol	61.4	70.76
VIT_00s0203g00040.t01	Wine grape	nucleus	66.54	68.56
Solyc02g079230.2.1	Tomato	nucleus, plastid	65.81	67.04
PGSC0003DMT400057560	Potato	nucleus	65.81	67.04
GSMUA_Achr4P23830_001	Banana	cytosol	66.18	66.67
KRH49936	Soybean	nucleus	63.24	63.94
KRH41939	Soybean	nucleus	62.5	63.43
Bra020894.1-P	Field mustard	nucleus	62.87	62.18
CDX79064	Canola	nucleus, plastid	64.34	61.62
CDY44751	Canola	nucleus	54.41	61.41
CDX76427	Canola	nucleus	63.6	61.35
CDY47093	Canola	nucleus	63.6	60.7
KRH10748	Soybean	cytosol	56.62	60.16
CDX82825	Canola	nucleus, plastid	63.97	59.79
Bra013528.1-P	Field mustard	nucleus, plastid	63.97	59.59
CDY71216	Canola	nucleus, plastid	56.62	54.8
AT4G21450.3	Thale cress	nucleus	63.24	54.78
AT4G05060.1	Thale cress	nucleus, plastid	57.72	54.7
Bra029550.1-P	Field mustard	plastid	55.88	54.09

Protein Annotations

EnsemblPlants:TraesCS2D01G210100.1	EnsemblPlantsGene:TraesCS2D01G210100	Gene3D:2.60.40.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783
InterPro:Ig-like_fold	InterPro:MSP_dom	InterPro:PapD-like_sf	InterPro:VAP	PANTHER:PTHR10809	PANTHER:PTHR10809:SF56
PFAM:PF00635	PFscan:PS50202	SEG:seg	SUPFAM:SSF49354	MapMan:35.1	:

Description

No Description!

Coordinates

chr2D:+:166105507..166109659

Molecular Weight (calculated)

29638.6 Da

IEP (calculated)

9.675

GRAVY (calculated)

-0.428

Length

272 amino acids

Sequence
(BLAST)

001: MAISGDDRYA PAADSGGGKL WNLCRMPFRQ ASGAPAPASS SSSSGIHHSA GRYGHEAPVA GDGGAPVAPA GISTVAKSLL PARRRLRLDP SNKLYFPYEP
101: GKQVKSAIRI KNTSKSHVAF KFQTTAPKSC FMRPPGAILA PGETIIATVF KFVEHPENNE NILQKCKVKF KILSLKVKGP MEYAPELFDE QKDQAVVEKI
201: LRVVFLDVQN PGPQLEKLNT QLAEAEAALE ARKKPPEENG PKIVGEGLVI DEWKERRERY LAQQQVEAVD SV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.