Factsheet for Os07t0558800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 18260611
golgi: 25047511
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G233200.1	Wheat	nucleus	79.93	83.46
HORVU2Hr1G041130.3	Barley	nucleus	79.93	83.15
TraesCS2A01G206000.1	Wheat	nucleus	79.58	83.09
TraesCS2D01G210100.1	Wheat	cytosol	78.87	82.35
EER97373	Sorghum	nucleus	79.58	81.59
Os08t0141300-01	Rice	plasma membrane	58.8	71.67
KRH21581	Soybean	plastid	46.83	71.51
VIT_00s0203g00040.t01	Wine grape	nucleus	64.08	68.94
GSMUA_Achr4P23830_001	Banana	cytosol	64.44	67.78
KRH49936	Soybean	nucleus	61.27	64.68
Bra020894.1-P	Field mustard	nucleus	62.32	64.36
CDX76427	Canola	nucleus	63.73	64.18
KRH41939	Soybean	nucleus	60.56	64.18
PGSC0003DMT400057560	Potato	nucleus	60.21	64.04
Solyc02g079230.2.1	Tomato	nucleus, plastid	60.21	64.04
CDY47093	Canola	nucleus	63.73	63.51
CDX79064	Canola	nucleus, plastid	63.38	63.38
KRH10748	Soybean	cytosol	56.69	62.89
CDX82825	Canola	nucleus, plastid	64.44	62.89
Bra013528.1-P	Field mustard	nucleus, plastid	64.08	62.33
CDY44751	Canola	nucleus	51.41	60.58
AT4G21450.3	Thale cress	nucleus	62.32	56.37
AT4G05060.1	Thale cress	nucleus, plastid	55.28	54.7
CDY71216	Canola	nucleus, plastid	53.52	54.09
Bra029550.1-P	Field mustard	plastid	52.82	53.38

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EntrezGene:4343585	EMBL:AK100986	ProteinID:BAC84037.1	ProteinID:BAF21891.1
ProteinID:BAT02125.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:MSP_dom	EnsemblPlantsGene:Os07g0558800	EnsemblPlants:Os07t0558800-01	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF56	InterPro:PapD-like_sf	UniProt:Q6Z407	SUPFAM:SSF49354	UniParc:UPI00001BF546	InterPro:VAP
RefSeq:XP_015647976.1	SEG:seg	:	:	:	:

Description

PapD-like domain containing protein. (Os07t0558800-01)

Coordinates

chr7:+:22333941..22338268

Molecular Weight (calculated)

30601.5 Da

IEP (calculated)

9.541

GRAVY (calculated)

-0.462

Length

284 amino acids

Sequence
(BLAST)

001: MAISGEDRYA AAGGGGDSGG GKLWNLCRMP FWQPGGAPAT ASAPPPPSSS SSSAGIHHHS AGRYGHEGGG GGAVAGDGAP AGSISSVAKS LLPARRRLRL
101: DPPNKLYFPY QPGQQVRSAI RIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEHPEN NENVLQKCKV KFKILSLKVK GPMDYAPEMF
201: DEQRDQAVVE KILRVVFLNV ENPGPQLEKL NNQLAEAEAA LEARKKPPEE NGPKIVGEGL VIDEWKERRE RYLAQQQVEV VDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.