Factsheet for GSMUA_Achr4P23830_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21581	Soybean	plastid	49.26	71.51
VIT_00s0203g00040.t01	Wine grape	nucleus	69.63	71.21
GSMUA_Achr3P22970_001	Banana	nucleus	66.67	68.97
GSMUA_Achr8P33100_001	Banana	nucleus	68.89	68.89
HORVU2Hr1G041130.3	Barley	nucleus	68.15	67.4
PGSC0003DMT400057560	Potato	nucleus	66.3	67.04
Solyc02g079230.2.1	Tomato	nucleus, plastid	66.3	67.04
TraesCS2D01G210100.1	Wheat	cytosol	66.67	66.18
TraesCS2A01G206000.1	Wheat	nucleus	66.67	66.18
TraesCS2B01G233200.1	Wheat	nucleus	66.67	66.18
EER97373	Sorghum	nucleus	66.67	64.98
CDX79064	Canola	nucleus, plastid	68.15	64.79
KRH49936	Soybean	nucleus	64.44	64.68
KRH41939	Soybean	nucleus	64.07	64.55
Os07t0558800-01	Rice	plasma membrane	67.78	64.44
Bra020894.1-P	Field mustard	nucleus	65.56	64.36
CDX76427	Canola	nucleus	67.04	64.18
KRH10748	Soybean	cytosol	60.74	64.06
CDX82825	Canola	nucleus, plastid	68.15	63.23
CDY47093	Canola	nucleus	66.67	63.16
Bra013528.1-P	Field mustard	nucleus, plastid	67.78	62.67
CDY44751	Canola	nucleus	54.44	61.0
AT4G21450.3	Thale cress	nucleus	65.93	56.69
CDY71216	Canola	nucleus, plastid	58.15	55.87
Bra029550.1-P	Field mustard	plastid	57.41	55.16
GSMUA_Achr11P...	Banana	nucleus, plastid, vacuole	28.52	54.23
AT4G05060.1	Thale cress	nucleus, plastid	57.04	53.66
GSMUA_Achr11P...	Banana	cytosol	50.0	47.2
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	24.81	43.51

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:GSMUA_Achr4G23830_001	EnsemblPlants:GSMUA_Achr4P23830_001	EnsemblPlants:GSMUA_Achr4T23830_001
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0SRJ4	InterPro:MSP_dom	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI000294FE6B
InterPro:VAP	SEG:seg	:	:	:	:

Description

MSP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G23830_001]

Coordinates

chr4:-:23821890..23825453

Molecular Weight (calculated)

29793.5 Da

IEP (calculated)

9.721

GRAVY (calculated)

-0.471

Length

270 amino acids

Sequence
(BLAST)

001: MALANENPEA SGGGNVWNLC RMPFWQAGGS GSSSSSAAAG VSHHHVIHGH APRSAEGSDT QYSGASGSVS SVAKSLLLTR RRLRLDPASK LYFPYEPGKQ
101: VRSAIKIKNT SKSPVAFKFQ TTSPKSCFMR PPGAILSPGE HIIATVFKFV EHPENNEKVL DQKNKVKFKI VSLKVKGPME YVPELFDEQK DQVAVEQILS
201: VVFLNVERPS PRLDKLKRQL AEADAAVEAH KKPPEETGPR ILGEGLVIDE WKERRERYLA QHQVEFVDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.