Factsheet for Solyc02g079230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057560	Potato	nucleus	99.25	99.25
VIT_00s0203g00040.t01	Wine grape	nucleus	75.28	76.14
TraesCS7A01G306700.2	Wheat	cytosol	65.17	75.98
TraesCS7B01G207000.2	Wheat	cytosol	64.79	75.55
HORVU7Hr1G073060.2	Barley	plastid	63.67	74.24
KRH21581	Soybean	plastid	51.69	74.19
Zm00001d049598_P001	Maize	plastid	62.92	73.68
Os08t0141300-01	Rice	plasma membrane	64.04	73.39
TraesCS7D01G303600.2	Wheat	cytosol	64.79	73.31
KRH49936	Soybean	nucleus	73.41	72.86
Zm00001d024661_P001	Maize	cytosol	62.17	72.49
KRH41939	Soybean	nucleus	71.91	71.64
EES13332	Sorghum	plastid	62.92	71.49
Bra020894.1-P	Field mustard	nucleus	73.03	70.91
CDX79064	Canola	nucleus, plastid	74.53	70.07
CDX76427	Canola	nucleus	73.41	69.5
Solyc12g005390.1.1	Tomato	mitochondrion	57.68	69.37
Solyc07g063630.2.1	Tomato	plastid	67.79	69.35
CDX82825	Canola	nucleus, plastid	75.28	69.07
Bra013528.1-P	Field mustard	nucleus, plastid	74.91	68.49
CDY47093	Canola	nucleus	73.03	68.42
GSMUA_Achr8P33100_001	Banana	nucleus	68.54	67.78
GSMUA_Achr4P23830_001	Banana	cytosol	67.04	66.3
GSMUA_Achr3P22970_001	Banana	nucleus	64.79	66.28
CDY44751	Canola	nucleus	59.55	65.98
TraesCS2A01G206000.1	Wheat	nucleus	67.04	65.81
TraesCS2B01G233200.1	Wheat	nucleus	67.04	65.81
TraesCS2D01G210100.1	Wheat	cytosol	67.04	65.81
KRH10748	Soybean	cytosol	62.92	65.62
HORVU2Hr1G041130.3	Barley	nucleus	67.04	65.57
Solyc07g054740.2.1	Tomato	plastid	63.67	63.67
AT4G21450.3	Thale cress	nucleus	74.53	63.38
EER97373	Sorghum	nucleus	65.54	63.18
AT4G05060.1	Thale cress	nucleus, plastid	67.04	62.37
CDY71216	Canola	nucleus, plastid	65.54	62.28
Bra029550.1-P	Field mustard	plastid	64.42	61.21
Os07t0558800-01	Rice	plasma membrane	64.04	60.21
GSMUA_Achr11P...	Banana	cytosol	50.94	47.55
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	25.84	44.81

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
UniProt:K4B9E7	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48
InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc02g079230.2	EnsemblPlants:Solyc02g079230.2.1	UniParc:UPI000276886C	InterPro:VAP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:43842131..43846261

Molecular Weight (calculated)

30108.0 Da

IEP (calculated)

10.212

GRAVY (calculated)

-0.644

Length

267 amino acids

Sequence
(BLAST)

001: MAIADEKDGK VWGLFKLPFR NAQSTTTSRS SSHNTLHYRS QQHQSLGNTS LDDGSVPRSN SSSSVSSVAR SLLPARRRLK LDPSNKLYFP YEPGKQVRSA
101: IKIKNSSKSH VAFKFQTTAP KSCFMRPPGA ILAPGESIIA TVFKFVEHPE NNEKPMDQKS RVKFKIMSLK VKGPMDYVPE LFEEQKDQVA VEQILRVIFL
201: DVERPSPTLE KLKRQLAEAD AALEERKKPV EDTGPKIIGE GLVIDEWKER RERYLARQQV EGGVESV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.