Factsheet for Solyc07g063630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049547	Potato	cytosol, plastid	83.91	84.23
Solyc12g005390.1.1	Tomato	mitochondrion	68.2	80.18
KRH22167	Soybean	plastid	69.73	75.83
KRH27165	Soybean	plastid	68.97	75.63
CDY46787	Canola	cytosol	67.05	72.61
VIT_19s0014g03740.t01	Wine grape	nucleus, plastid	73.18	72.35
Bra003015.1-P	Field mustard	cytosol	66.67	72.2
CDY28793	Canola	plastid	70.11	69.32
Bra022697.1-P	Field mustard	plastid	69.35	68.56
CDY41776	Canola	plastid	68.97	68.44
AT5G54110.1	Thale cress	nucleus, plastid	69.73	68.42
Solyc02g079230.2.1	Tomato	nucleus, plastid	69.35	67.79
Solyc07g054740.2.1	Tomato	plastid	63.98	62.55

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold
UniProt:K4CH46	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF58
InterPro:PapD-like_sf	SUPFAM:SSF49354	EnsemblPlantsGene:Solyc07g063630.2	EnsemblPlants:Solyc07g063630.2.1	UniParc:UPI000276C022	InterPro:VAP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:66048170..66051650

Molecular Weight (calculated)

29227.8 Da

IEP (calculated)

10.075

GRAVY (calculated)

-0.638

Length

261 amino acids

Sequence
(BLAST)

001: MAIADHHKSH NSDGKLWKLC PLWQSGTTSS SSSSTQNLHS QNHSHQNGVG SNSSRASTSV SSVARSLLPA RRRLRLDPAN SLYFPYEPGK QVKSAVKIKN
101: TSKSYVAFKF QTTAPKSCYM RPPGGILEPG ESVIATVFKF VEHPENNEKP VDQKSKVKFK IISLKVKEGV DYVPELFEEQ KDHVTIERIL RVVFLDPERP
201: SPVLDKLKRQ LAEAEAALES RKKPPVETGP KVVGEGLVID EWKERREKYL ARQQVEAVDS V

Best Arabidopsis Sequence Match ( AT5G54110.1 )
(BLAST)

001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS

Arabidopsis Description

PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.