CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
plasma membrane 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22167	Soybean	plastid	93.7	92.92
PGSC0003DMT400048960	Potato	mitochondrion	65.97	70.4
Solyc12g005390.1.1	Tomato	mitochondrion	65.55	70.27
CDY46787	Canola	cytosol	71.01	70.12
KRH21581	Soybean	plastid	54.62	69.89
Bra003015.1-P	Field mustard	cytosol	70.59	69.71
Solyc07g063630.2.1	Tomato	plastid	75.63	68.97
VIT_19s0014g03740.t01	Wine grape	nucleus, plastid	75.21	67.8
AT5G54110.1	Thale cress	nucleus, plastid	74.79	66.92
Bra022697.1-P	Field mustard	plastid	73.95	66.67
CDY41776	Canola	plastid	73.53	66.54
CDY28793	Canola	plastid	73.53	66.29
KRH26895	Soybean	nucleus	71.01	64.26
PGSC0003DMT400049547	Potato	cytosol, plastid	70.17	64.23
KRH56041	Soybean	nucleus, plastid	71.85	63.1
KRH22454	Soybean	nucleus	68.49	61.51
KRH25486	Soybean	nucleus, plastid	58.4	59.15
KRH49936	Soybean	nucleus	66.81	59.11
KRH41939	Soybean	nucleus	66.39	58.96
KRH10748	Soybean	cytosol	62.18	57.81

Protein Annotations

EntrezGene:100778320	Gene3D:2.60.40.10	MapMan:35.1	EMBL:ACUP02007781	EnsemblPlantsGene:GLYMA_12G218700	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
UniProt:I1LUV5	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KRH27165	ProteinID:KRH27165
ProteinID:KRH27165.1	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF58
InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI000233C8BE	InterPro:VAP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:37830069..37833543

Molecular Weight (calculated)

26939.5 Da

IEP (calculated)

10.491

GRAVY (calculated)

-0.524

Length

238 amino acids

Sequence
(BLAST)

001: MAVAVAGRQK PSSDASLFTL CPFWSSRNAT QRSTKTVSSV ARSLLRPRRK LRLDPSSYLY FPYEPGKQVR SAVRLKNTSK SHVAFKFQTT APKSCYMRPP
101: GGTLAPGESL IATVFKFVEQ PENNEKLSDQ KHKVKFKIMS LKVKEGVDYV PELFDEQKDL VTMERILRVV FIDPERQSSV LEKLKRQLAE ADAAVEARKK
201: PPVEAGPRVA AEGLVIDEWK ERREKYLARQ QVQAVDSV

Best Arabidopsis Sequence Match ( AT5G54110.1 )
(BLAST)

001: MPIGDRQNPS VEKKKNLFRL CPFWQRRSTT SSSSTQNPNQ NYRSRHGNRN TDISAVSKPP LTMSSVARSL LPARRRLRLD PSSYLYFPYE PGKQVRSAIK
101: LKNTSKSHTA FKFQTTAPKS CYMRPPGGVL APGESVFATV FKFVEHPENN EKQPLNQKSK VKFKIMSLKV KPGVEYVPEL FDEQKDQVAV EQVLRVIFID
201: ADRPSAALEK LKRQLDEAEA AVEARKKPPP ETGPRVVGEG LVIDEWKERR EKYLARQQVE SVDSLS

Arabidopsis Description

PVA41Vesicle-associated protein 4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q1ECE0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.