CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22454	Soybean	nucleus	94.3	93.58
KRH56041	Soybean	nucleus, plastid	84.41	81.92
KRH25486	Soybean	nucleus, plastid	71.48	80.0
VIT_12s0057g00200.t01	Wine grape	nucleus, plastid	73.38	74.52
KRH22167	Soybean	plastid	65.78	72.08
KRH27165	Soybean	plastid	64.26	71.01
KRH21581	Soybean	plastid	49.05	69.35
KRH49936	Soybean	nucleus	67.3	65.8
PGSC0003DMT400047310	Potato	plastid	66.16	65.41
KRH41939	Soybean	nucleus	66.16	64.93
Solyc07g054740.2.1	Tomato	plastid	65.78	64.79
KRH10748	Soybean	cytosol	60.08	61.72

Protein Annotations

EntrezGene:100816998	Gene3D:2.60.40.10	MapMan:35.1	EMBL:ACUP02007755	EnsemblPlantsGene:GLYMA_12G200900	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
UniProt:I1LUD0	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	EnsemblPlants:KRH26895	ProteinID:KRH26895
ProteinID:KRH26895.1	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48
InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI000233C447	InterPro:VAP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:36176150..36180258

Molecular Weight (calculated)

29785.6 Da

IEP (calculated)

9.665

GRAVY (calculated)

-0.689

Length

263 amino acids

Sequence
(BLAST)

001: MEVETEKSGS DGKGWSFCRM PFWQTTHTPS SSSMSYMHNV HQQSQNNAQS VDRSSHHSST TVSSVAKSLL PTKRRLRLDP SNKLYFPYEP GKQVRSAIAI
101: KNTCKSHVAF KFQTTAPKSC YMRPPGGILA PGESIIATVF KFVEPPENNE KSIDKKSKVK FKIMSLKVQG EMDYVPELFD EQRDQVAIEQ ILRVMFLDPE
201: RPSPVLDKLK RMLAEADAAL EARKKPPEEK GPRVAGEGLV IDEWKERRER YLAQQQVQGV DSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.