Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g054740.2.1 | Tomato | plastid | 95.86 | 95.51 |
| VIT_12s0057g00200.t01 | Wine grape | nucleus, plastid | 69.17 | 71.04 |
| PGSC0003DMT400048960 | Potato | mitochondrion | 56.39 | 67.26 |
| KRH56041 | Soybean | nucleus, plastid | 67.67 | 66.42 |
| KRH26895 | Soybean | nucleus | 65.41 | 66.16 |
| PGSC0003DMT400057560 | Potato | nucleus | 65.41 | 65.17 |
| KRH25486 | Soybean | nucleus, plastid | 57.14 | 64.68 |
| KRH22454 | Soybean | nucleus | 63.16 | 63.4 |
| PGSC0003DMT400049547 | Potato | cytosol, plastid | 58.65 | 60.0 |
Protein Annotations
| EntrezGene:102584869 | Gene3D:2.60.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M1BKI6 | InterPro:MSP_dom | PFAM:PF00635 | EnsemblPlantsGene:PGSC0003DMG400018374 |
| PGSC:PGSC0003DMG400018374 | EnsemblPlants:PGSC0003DMT400047310 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF48 | InterPro:PapD-like_sf |
| SUPFAM:SSF49354 | UniParc:UPI000294F6F1 | InterPro:VAP | RefSeq:XP_006357535.1 | SEG:seg | : |
Description
Structural molecule [Source:PGSC_GENE;Acc:PGSC0003DMG400018374]
Coordinates
chr7:+:48387967..48393433
Molecular Weight (calculated)
29705.4 Da
IEP (calculated)
9.533
GRAVY (calculated)
-0.516
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: MALANEKSVS DGKIWGLCKL PFWHSTSSSV AASSSSIASS SSSFRQHHNG ISVDHHSNIH APLKVSSVAK SLLPTRRKLS LDPQNKLYFP YEPGKQVKSA
101: IRIKNITKNH VAFKFQTTGP KSCYMRPPGG VLAPDESLIA TVFKFVEPPD NNEKQVGKKS RVKFKVMSLK VKDDVDYVPE LFDERRDEVA VEQVLGVVFL
201: DAERPCPALE KLNRQLAEAE AEVEARKRPP EDTGPKIVGE GLVIDEWKER RERYLARQQV EGVDSV
101: IRIKNITKNH VAFKFQTTGP KSCYMRPPGG VLAPDESLIA TVFKFVEPPD NNEKQVGKKS RVKFKVMSLK VKDDVDYVPE LFDERRDEVA VEQVLGVVFL
201: DAERPCPALE KLNRQLAEAE AEVEARKRPP EDTGPKIVGE GLVIDEWKER RERYLARQQV EGVDSV
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
Arabidopsis Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.