Skip to main content
crop-pal logo
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • cytosol 1
  • nucleus 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g079230.2.1 Tomato nucleus, plastid 99.25 99.25
TraesCS7A01G306700.2 Wheat cytosol 65.17 75.98
VIT_00s0203g00040.t01 Wine grape nucleus 74.91 75.76
TraesCS7B01G207000.2 Wheat cytosol 64.79 75.55
HORVU7Hr1G073060.2 Barley plastid 63.67 74.24
KRH21581 Soybean plastid 51.69 74.19
Zm00001d049598_P001 Maize plastid 62.92 73.68
Os08t0141300-01 Rice plasma membrane 64.04 73.39
TraesCS7D01G303600.2 Wheat cytosol 64.79 73.31
KRH49936 Soybean nucleus 73.03 72.49
Zm00001d024661_P001 Maize cytosol 62.17 72.49
KRH41939 Soybean nucleus 71.91 71.64
EES13332 Sorghum plastid 62.92 71.49
Bra020894.1-P Field mustard nucleus 72.28 70.18
CDX79064 Canola nucleus, plastid 74.16 69.72
CDX76427 Canola nucleus 72.66 68.79
CDX82825 Canola nucleus, plastid 74.91 68.73
PGSC0003DMT400048960 Potato mitochondrion 57.3 68.61
Bra013528.1-P Field mustard nucleus, plastid 74.53 68.15
GSMUA_Achr8P33100_001 Banana nucleus 68.54 67.78
CDY47093 Canola nucleus 72.28 67.72
GSMUA_Achr4P23830_001 Banana cytosol 67.04 66.3
GSMUA_Achr3P22970_001 Banana nucleus 64.79 66.28
CDY44751 Canola nucleus 59.55 65.98
TraesCS2A01G206000.1 Wheat nucleus 67.04 65.81
TraesCS2B01G233200.1 Wheat nucleus 67.04 65.81
TraesCS2D01G210100.1 Wheat cytosol 67.04 65.81
HORVU2Hr1G041130.3 Barley nucleus 67.04 65.57
PGSC0003DMT400047310 Potato plastid 65.17 65.41
KRH10748 Soybean cytosol 62.55 65.23
PGSC0003DMT400049547 Potato cytosol, plastid 62.55 64.23
EER97373 Sorghum nucleus 65.54 63.18
AT4G21450.3 Thale cress nucleus 74.16 63.06
AT4G05060.1 Thale cress nucleus, plastid 67.04 62.37
CDY71216 Canola nucleus, plastid 65.54 62.28
Bra029550.1-P Field mustard plastid 64.42 61.21
Os07t0558800-01 Rice plasma membrane 64.04 60.21
GSMUA_Achr11P... Banana cytosol 50.94 47.55
GSMUA_Achr11P... Banana cytosol, nucleus, plastid 25.84 44.81
Protein Annotations
EntrezGene:102597206Gene3D:2.60.40.10MapMan:35.1GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020InterPro:IPR000535InterPro:IPR013783
InterPro:Ig-like_foldUniProt:M1C1A3InterPro:MSP_domPFAM:PF00635EnsemblPlantsGene:PGSC0003DMG400022352PGSC:PGSC0003DMG400022352
EnsemblPlants:PGSC0003DMT400057560PFscan:PS50202PANTHER:PTHR10809PANTHER:PTHR10809:SF48InterPro:PapD-like_sfSUPFAM:SSF49354
UniParc:UPI000295D196InterPro:VAPRefSeq:XP_006347144.1SEG:seg::
Description
Structural molecule [Source:PGSC_GENE;Acc:PGSC0003DMG400022352]
Coordinates
chr2:-:34979458..34984587
Molecular Weight (calculated)
30137.2 Da
IEP (calculated)
10.212
GRAVY (calculated)
-0.604
Length
267 amino acids
Sequence
(BLAST)
001: MAIADEKDGK VWGLFKLPFR NAQSTMTSRS SSHNTLHYRS QQHQSLGITS LDDGSVPRSN SSSSVSSVAR SLLPARRRLK LDPSNKLYFP YEPGKQVRSA
101: IKIKNSSKSH VAFKFQTTAP KSCFMRPPGA ILAPGESIIA TVFKFVEHPE NNEKPMDQKS RVKFKIMSLK VKGPMDYVPE LFEEQKDQVA VEQILRVIFL
201: DVERPSPTLE KLKRQLAEAD AALEERKKPV EDTGPKIIGE GLVIDEWKER RERYLARQQV EGGVESV
Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
Arabidopsis Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.