CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049598_P001	Maize	plastid	89.79	92.54
Zm00001d024661_P001	Maize	cytosol	88.51	90.83
TraesCS7B01G207000.2	Wheat	cytosol	82.98	85.15
TraesCS7A01G306700.2	Wheat	cytosol	82.98	85.15
HORVU7Hr1G073060.2	Barley	plastid	82.13	84.28
Os08t0141300-01	Rice	plasma membrane	82.98	83.69
TraesCS7D01G303600.2	Wheat	cytosol	82.98	82.63
KRH21581	Soybean	plastid	57.02	72.04
GSMUA_Achr3P22970_001	Banana	nucleus	74.47	67.05
VIT_00s0203g00040.t01	Wine grape	nucleus	74.89	66.67
GSMUA_Achr8P33100_001	Banana	nucleus	74.89	65.19
PGSC0003DMT400057560	Potato	nucleus	71.49	62.92
Solyc02g079230.2.1	Tomato	nucleus, plastid	71.49	62.92
KRH49936	Soybean	nucleus	69.79	60.97
KRH41939	Soybean	nucleus	69.36	60.82
Bra020894.1-P	Field mustard	nucleus	68.94	58.91
CDY44751	Canola	nucleus	60.0	58.51
EER97373	Sorghum	nucleus	68.94	58.48
CDX76427	Canola	nucleus	68.94	57.45
KRH10748	Soybean	cytosol	62.55	57.42
CDX79064	Canola	nucleus, plastid	68.94	57.04
CDY47093	Canola	nucleus	68.94	56.84
CDX82825	Canola	nucleus, plastid	68.94	55.67
Bra013528.1-P	Field mustard	nucleus, plastid	68.94	55.48
CDY71216	Canola	nucleus, plastid	61.28	51.25
AT4G05060.1	Thale cress	nucleus, plastid	62.55	51.22
AT4G21450.3	Thale cress	nucleus	68.09	50.96
Bra029550.1-P	Field mustard	plastid	60.43	50.53
GSMUA_Achr11P...	Banana	cytosol	56.6	46.5
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.13	33.77

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EntrezGene:8067814	UniProt:C5YN28	EnsemblPlants:EES13332	ProteinID:EES13332
ProteinID:EES13332.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0008150	GO:GO:0009719	GO:GO:0009739	GO:GO:0016020	InterPro:IPR000535
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809
PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf	EnsemblPlantsGene:SORBI_3007G035600	SUPFAM:SSF49354	unigene:Sbi.11416	UniParc:UPI0001A87396
InterPro:VAP	RefSeq:XP_002443837.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:3213331..3215992

Molecular Weight (calculated)

25822.2 Da

IEP (calculated)

10.154

GRAVY (calculated)

-0.467

Length

235 amino acids

Sequence
(BLAST)

001: MPLWGSAASA PPAAEGDAAR APSGSAGGSG GGGGGVKVIR SLLPTRRRLR LDPPAKLYFP YEPGKQVRSA VRIKNISKSH VAFKFQTTAP KSCFMRPPGS
101: VLAPGESIIA TVFKFVEHPE NNEKPLDKCK VKFKIVSLKV KGPVEYVPEL FDEQKDQVAV EQILRVVFLD AERPSPQMDK LKRQLAEAEA ALEARKKPPE
201: DNSPRIVGEG LVIDEWKERR ERYLARQQIE GVDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.