CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G041130.3	Barley	nucleus	85.2	86.45
TraesCS2B01G233200.1	Wheat	nucleus	83.75	85.29
TraesCS2A01G206000.1	Wheat	nucleus	83.75	85.29
TraesCS2D01G210100.1	Wheat	cytosol	83.03	84.56
Os07t0558800-01	Rice	plasma membrane	81.59	79.58
KRH21581	Soybean	plastid	46.57	69.35
EES13332	Sorghum	plastid	58.48	68.94
GSMUA_Achr4P23830_001	Banana	cytosol	64.98	66.67
Solyc02g079230.2.1	Tomato	nucleus, plastid	63.18	65.54
PGSC0003DMT400057560	Potato	nucleus	63.18	65.54
VIT_00s0203g00040.t01	Wine grape	nucleus	62.45	65.53
Bra020894.1-P	Field mustard	nucleus	61.73	62.18
KRH49936	Soybean	nucleus	59.93	61.71
CDX76427	Canola	nucleus	62.82	61.7
CDX79064	Canola	nucleus, plastid	62.82	61.27
KRH41939	Soybean	nucleus	58.84	60.82
CDY47093	Canola	nucleus	62.45	60.7
CDX82825	Canola	nucleus, plastid	62.82	59.79
KRH10748	Soybean	cytosol	55.23	59.77
Bra013528.1-P	Field mustard	nucleus, plastid	62.45	59.25
CDY44751	Canola	nucleus	50.18	57.68
AT4G21450.3	Thale cress	nucleus	62.09	54.78
AT4G05060.1	Thale cress	nucleus, plastid	54.51	52.61
CDY71216	Canola	nucleus, plastid	52.71	51.96
Bra029550.1-P	Field mustard	plastid	51.62	50.89

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EntrezGene:8056328	UniProt:C5XBJ1	EnsemblPlants:EER97373	ProteinID:EER97373
ProteinID:EER97373.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom
PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF56	InterPro:PapD-like_sf	EnsemblPlantsGene:SORBI_3002G338200
SUPFAM:SSF49354	UniParc:UPI0001A836B8	InterPro:VAP	RefSeq:XP_002460852.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:+:70541666..70546422

Molecular Weight (calculated)

30119.1 Da

IEP (calculated)

9.552

GRAVY (calculated)

-0.421

Length

277 amino acids

Sequence
(BLAST)

001: MAISSEERQA PAGGDSGGGK LWNLCRMPFR QAGGAPAPAP PQSSSSSGIH HHSAGRYGHE APVAGDGAVQ AASAGSISSV AKSLLPARRR LRLDPANKLY
101: FPYEPGKQVK SAIRIKNTSK FHVAFKFQTT APMGCFMRPP GAVLAPGETI IATVFKFVEH PENNENVLQK CKVKFKILSL KVKGPMEYAP ELFDEQKDQA
201: AVEKILKVVF LDVNAQSPQL EKVNNQIAEA EAALEARKKP PEENGPKIVG EGLVIDEWKE RRERYLAQQQ VEVVDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.