Factsheet for Bra013528.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82825	Canola	nucleus, plastid	98.63	98.97
CDX79064	Canola	nucleus, plastid	94.86	97.54
Bra020894.1-P	Field mustard	nucleus	86.64	92.0
AT4G21450.3	Thale cress	nucleus	92.12	85.67
KRH21581	Soybean	plastid	47.95	75.27
Solyc02g079230.2.1	Tomato	nucleus, plastid	68.49	74.91
PGSC0003DMT400057560	Potato	nucleus	68.15	74.53
TraesCS7A01G306700.2	Wheat	cytosol	57.19	72.93
VIT_00s0203g00040.t01	Wine grape	nucleus	65.75	72.73
TraesCS7B01G207000.2	Wheat	cytosol	56.85	72.49
KRH49936	Soybean	nucleus	66.44	72.12
HORVU7Hr1G073060.2	Barley	plastid	55.82	71.18
Zm00001d049598_P001	Maize	plastid	55.48	71.05
KRH41939	Soybean	nucleus	65.07	70.9
Os08t0141300-01	Rice	plasma membrane	56.16	70.39
TraesCS7D01G303600.2	Wheat	cytosol	56.85	70.34
Zm00001d024661_P001	Maize	cytosol	54.79	69.87
EES13332	Sorghum	plastid	55.48	68.94
GSMUA_Achr4P23830_001	Banana	cytosol	62.67	67.78
KRH10748	Soybean	cytosol	58.56	66.8
GSMUA_Achr3P22970_001	Banana	nucleus	59.59	66.67
Bra029550.1-P	Field mustard	plastid	64.04	66.55
GSMUA_Achr8P33100_001	Banana	nucleus	61.3	66.3
HORVU2Hr1G041130.3	Barley	nucleus	60.27	64.47
TraesCS2B01G233200.1	Wheat	nucleus	59.93	64.34
Os07t0558800-01	Rice	plasma membrane	62.33	64.08
TraesCS2A01G206000.1	Wheat	nucleus	59.59	63.97
TraesCS2D01G210100.1	Wheat	cytosol	59.59	63.97
Bra003015.1-P	Field mustard	cytosol	52.74	63.9
Zm00001d049833_P001	Maize	plastid	33.22	62.58
EER97373	Sorghum	nucleus	59.25	62.45
Bra022697.1-P	Field mustard	plastid	56.16	62.12
GSMUA_Achr11P...	Banana	cytosol	44.18	45.1
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.95	43.51

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EnsemblPlantsGene:Bra013528	EnsemblPlants:Bra013528.1	EnsemblPlants:Bra013528.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4DAL8	InterPro:MSP_dom	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI0002546F99
InterPro:VAP	SEG:seg	:	:	:	:

Description

AT4G21450 (E=3e-134) | vesicle-associated membrane family protein / VAMP family protein

Coordinates

chrA01:+:6148555..6150301

Molecular Weight (calculated)

32631.5 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.870

Length

292 amino acids

Sequence
(BLAST)

001: MTMTTEEKPA SDGRGGWGFF KIPFRNSSGR GNAASSAATS PFPSSSSSTS SHLHNHHHHH NNHHHHHQLG YNGPHGDGSG QNQHPTPSPS VSSVAKSFLP
101: TKRRLKLDPS EKLYFPYEPG KQVRSAIKIK NTSKSHVAFK FQTTAPKSCF MRPPGAILAP GETIIATVFK FVEPPENNEK PMDQKSRVKF KIMSLKVKGP
201: MDYVPELFDE QKDDVSKEQI LRVIFLDPER PNPALEKLKR QLAEADAAVE ERKKPPEETG PKMIGEGLVI DEWKERRERY LAQQQGEGVD SV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.