Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d024661_P001 | Maize | cytosol | 92.9 | 62.88 |
| Zm00001d049598_P001 | Maize | plastid | 90.32 | 61.4 |
| KRH21581 | Soybean | plastid | 47.74 | 39.78 |
| CDY44751 | Canola | nucleus | 54.84 | 35.27 |
| KRH10748 | Soybean | cytosol | 58.06 | 35.16 |
| KRH41939 | Soybean | nucleus | 60.65 | 35.07 |
| KRH49936 | Soybean | nucleus | 60.65 | 34.94 |
| Bra020894.1-P | Field mustard | nucleus | 61.94 | 34.91 |
| CDX76427 | Canola | nucleus | 61.94 | 34.04 |
| CDX79064 | Canola | nucleus, plastid | 61.94 | 33.8 |
| CDY47093 | Canola | nucleus | 61.94 | 33.68 |
| CDX82825 | Canola | nucleus, plastid | 62.58 | 33.33 |
| Bra013528.1-P | Field mustard | nucleus, plastid | 62.58 | 33.22 |
| AT4G05060.1 | Thale cress | nucleus, plastid | 60.0 | 32.4 |
| CDY71216 | Canola | nucleus, plastid | 56.13 | 30.96 |
| AT4G21450.3 | Thale cress | nucleus | 61.94 | 30.57 |
| Bra029550.1-P | Field mustard | plastid | 54.84 | 30.25 |
Protein Annotations
| EntrezGene:103655267 | Gene3D:2.60.40.10 | MapMan:35.1 | UniProt:A0A1D6PYD0 | ProteinID:AQK51460.1 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF56 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | UniParc:UPI0004DEBAD4 | InterPro:VAP |
| EnsemblPlantsGene:Zm00001d049833 | EnsemblPlants:Zm00001d049833_P001 | EnsemblPlants:Zm00001d049833_T001 | SEG:seg | : | : |
Description
Vesicle-associated protein 4-2
Coordinates
chr4:-:47001011..47004653
Molecular Weight (calculated)
16837.8 Da
IEP (calculated)
11.023
GRAVY (calculated)
-0.222
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLWGTAAST QPAAKGDAAR APSGSGGGGV KVIRSLLPTR RRLRLDPPAK LYFPYEPGKQ VRSAVRIKNI SKSHVAFKFQ TTAPKSCFMR PPGGVLAPGE
101: SIIATVFKFV EHPENNEKPL DKCKVKFKIV SLKVKGPVEY VPELVNPLST FLGRL
101: SIIATVFKFV EHPENNEKPL DKCKVKFKIV SLKVKGPVEY VPELVNPLST FLGRL
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL VC
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL VC
Arabidopsis Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.