Factsheet for Zm00001d024661_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049598_P001	Maize	plastid	96.94	97.37
Zm00001d049833_P001	Maize	plastid	62.88	92.9
EES13332	Sorghum	plastid	90.83	88.51
Os08t0141300-01	Rice	plasma membrane	86.9	85.41
TraesCS7B01G207000.2	Wheat	cytosol	82.97	82.97
TraesCS7A01G306700.2	Wheat	cytosol	82.97	82.97
HORVU7Hr1G073060.2	Barley	plastid	82.1	82.1
TraesCS7D01G303600.2	Wheat	cytosol	82.97	80.51
KRH21581	Soybean	plastid	58.95	72.58
GSMUA_Achr3P22970_001	Banana	nucleus	76.42	67.05
GSMUA_Achr8P33100_001	Banana	nucleus	78.6	66.67
VIT_00s0203g00040.t01	Wine grape	nucleus	75.98	65.91
Solyc02g079230.2.1	Tomato	nucleus, plastid	72.49	62.17
PGSC0003DMT400057560	Potato	nucleus	72.49	62.17
KRH49936	Soybean	nucleus	70.74	60.22
KRH41939	Soybean	nucleus	70.31	60.07
CDY44751	Canola	nucleus	62.01	58.92
KRH10748	Soybean	cytosol	65.07	58.2
Bra020894.1-P	Field mustard	nucleus	69.43	57.82
CDX76427	Canola	nucleus	69.43	56.38
CDX79064	Canola	nucleus, plastid	69.43	55.99
CDY47093	Canola	nucleus	69.43	55.79
CDX82825	Canola	nucleus, plastid	69.87	54.98
Bra013528.1-P	Field mustard	nucleus, plastid	69.87	54.79
AT4G05060.1	Thale cress	nucleus, plastid	64.63	51.57
CDY71216	Canola	nucleus, plastid	62.88	51.25
Bra029550.1-P	Field mustard	plastid	62.01	50.53
AT4G21450.3	Thale cress	nucleus	69.0	50.32
GSMUA_Achr11P...	Banana	cytosol	58.08	46.5
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	22.27	33.12

Protein Annotations

EntrezGene:100284019	Gene3D:2.60.40.10	MapMan:35.1	ProteinID:AQK41696.1	UniProt:B6TP74	EMBL:EU966789
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0016020	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI000182DB9F
InterPro:VAP	EnsemblPlantsGene:Zm00001d024661	EnsemblPlants:Zm00001d024661_P001	EnsemblPlants:Zm00001d024661_T001	SEG:seg	:

Description

Structural molecule

Coordinates

chr10:-:82540025..82546173

Molecular Weight (calculated)

25440.7 Da

IEP (calculated)

10.047

GRAVY (calculated)

-0.512

Length

229 amino acids

Sequence
(BLAST)

001: MPLWGTAASA QPAAEGDAAR APSGSGGGGV KVIRSLLPTR RRLRLDPPAK LYFPYEPGKQ VRSAVRIKNI SKSHVAFKFQ TTAPKSCFMR PPGGVLAPGE
101: SIIATVFKFV EHPENNEKPL DKCKVKFKIV SLKVKGPVEY VPELFDEQKD QVAVEQILRV VFLDAERPSP QMDKLKRQLA EAEAALEARK KPPEDNGTRI
201: VGEGLVIDEW KERRERYLAR QQEEGVDSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.