Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G207000.2 | Wheat | cytosol | 67.43 | 76.86 |
| Zm00001d049598_P001 | Maize | plastid | 67.05 | 76.75 |
| Zm00001d024661_P001 | Maize | cytosol | 67.05 | 76.42 |
| TraesCS7A01G306700.2 | Wheat | cytosol | 67.05 | 76.42 |
| Os08t0141300-01 | Rice | plasma membrane | 67.82 | 75.97 |
| HORVU7Hr1G073060.2 | Barley | plastid | 66.28 | 75.55 |
| TraesCS7D01G303600.2 | Wheat | cytosol | 67.43 | 74.58 |
| EES13332 | Sorghum | plastid | 67.05 | 74.47 |
| GSMUA_Achr8P33100_001 | Banana | nucleus | 77.01 | 74.44 |
| KRH21581 | Soybean | plastid | 52.87 | 74.19 |
| VIT_00s0203g00040.t01 | Wine grape | nucleus | 69.73 | 68.94 |
| GSMUA_Achr4P23830_001 | Banana | cytosol | 68.97 | 66.67 |
| Solyc02g079230.2.1 | Tomato | nucleus, plastid | 66.28 | 64.79 |
| PGSC0003DMT400057560 | Potato | nucleus | 66.28 | 64.79 |
| Bra020894.1-P | Field mustard | nucleus | 67.43 | 64.0 |
| CDY44751 | Canola | nucleus | 59.0 | 63.9 |
| KRH49936 | Soybean | nucleus | 65.13 | 63.2 |
| KRH41939 | Soybean | nucleus | 64.37 | 62.69 |
| CDX79064 | Canola | nucleus, plastid | 67.82 | 62.32 |
| CDX76427 | Canola | nucleus | 67.05 | 62.06 |
| KRH10748 | Soybean | cytosol | 60.54 | 61.72 |
| CDY47093 | Canola | nucleus | 67.05 | 61.4 |
| GSMUA_Achr11P... | Banana | nucleus, plastid, vacuole | 33.33 | 61.27 |
| CDX82825 | Canola | nucleus, plastid | 66.67 | 59.79 |
| Bra013528.1-P | Field mustard | nucleus, plastid | 66.67 | 59.59 |
| GSMUA_Achr11P... | Banana | cytosol | 63.98 | 58.39 |
| CDY71216 | Canola | nucleus, plastid | 60.92 | 56.58 |
| AT4G05060.1 | Thale cress | nucleus, plastid | 62.07 | 56.45 |
| Bra029550.1-P | Field mustard | plastid | 60.15 | 55.87 |
| AT4G21450.3 | Thale cress | nucleus | 64.75 | 53.82 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 26.05 | 44.16 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSMUA_Achr3G22970_001 | EnsemblPlants:GSMUA_Achr3P22970_001 | EnsemblPlants:GSMUA_Achr3T22970_001 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M0SH13 | InterPro:MSP_dom | PFAM:PF00635 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF48 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | UniParc:UPI000296CC07 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G22970_001]
Coordinates
chr3:-:23790018..23793476
Molecular Weight (calculated)
28763.2 Da
IEP (calculated)
10.291
GRAVY (calculated)
-0.555
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIADGKADG KGWGIFRLRF FGGGGGGGGG AGSSSSNSSS TLSLTHHRHS RSSNPGASSI SSVAWSLLPT RRRLRLDPTS KLYFPYEPGK QVRSAVRIKN
101: TSKSHVAFKF QTTAPKSCFM RPPGGILSPG ESIIATVFKF VEQPENNERP LDQKSNVKFK IVSLKVNGPV EYVPELFDEQ KDHVSVEQIL RVVFLDPDRP
201: CSQMEKLKRQ LAEAEAAVEA RKKPPEDTGP RIVGEGLVID EWKERRERYL ARQQVEGVDS V
101: TSKSHVAFKF QTTAPKSCFM RPPGGILSPG ESIIATVFKF VEQPENNERP LDQKSNVKFK IVSLKVNGPV EYVPELFDEQ KDHVSVEQIL RVVFLDPDRP
201: CSQMEKLKRQ LAEAEAAVEA RKKPPEDTGP RIVGEGLVID EWKERRERYL ARQQVEGVDS V
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
Arabidopsis Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.