Factsheet for Os08t0141300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049598_P001	Maize	plastid	85.84	87.72
Zm00001d024661_P001	Maize	cytosol	85.41	86.9
TraesCS7A01G306700.2	Wheat	cytosol	82.4	83.84
EES13332	Sorghum	plastid	83.69	82.98
TraesCS7B01G207000.2	Wheat	cytosol	81.55	82.97
HORVU7Hr1G073060.2	Barley	plastid	81.12	82.53
TraesCS7D01G303600.2	Wheat	cytosol	81.55	80.51
KRH21581	Soybean	plastid	58.8	73.66
GSMUA_Achr3P22970_001	Banana	nucleus	75.97	67.82
GSMUA_Achr8P33100_001	Banana	nucleus	77.68	67.04
VIT_00s0203g00040.t01	Wine grape	nucleus	75.54	66.67
Solyc02g079230.2.1	Tomato	nucleus, plastid	73.39	64.04
PGSC0003DMT400057560	Potato	nucleus	73.39	64.04
CDY44751	Canola	nucleus	62.66	60.58
KRH49936	Soybean	nucleus	69.53	60.22
KRH41939	Soybean	nucleus	69.1	60.07
Bra020894.1-P	Field mustard	nucleus	69.96	59.27
Os07t0558800-01	Rice	plasma membrane	71.67	58.8
KRH10748	Soybean	cytosol	63.95	58.2
CDX76427	Canola	nucleus	69.96	57.8
CDX79064	Canola	nucleus, plastid	69.96	57.39
CDY47093	Canola	nucleus	69.96	57.19
CDX82825	Canola	nucleus, plastid	70.39	56.36
Bra013528.1-P	Field mustard	nucleus, plastid	70.39	56.16
CDY71216	Canola	nucleus, plastid	63.09	52.31
AT4G05060.1	Thale cress	nucleus, plastid	63.95	51.92
Bra029550.1-P	Field mustard	plastid	62.23	51.6
AT4G21450.3	Thale cress	nucleus	69.53	51.59
GSMUA_Achr11P...	Banana	cytosol	56.22	45.8
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	21.89	33.12

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EMBL:AK058337	ProteinID:BAD11591.1	ProteinID:BAD13178.1	ProteinID:BAF22886.1
ProteinID:BAT03786.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0008150	GO:GO:0009719	GO:GO:0009739	GO:GO:0016020
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:MSP_dom	EnsemblPlantsGene:Os08g0141300	EnsemblPlants:Os08t0141300-01
PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF48	InterPro:PapD-like_sf	UniProt:Q6YZ10
SUPFAM:SSF49354	UniParc:UPI000024165E	InterPro:VAP	SEG:seg	:	:

Description

PapD-like domain containing protein. (Os08t0141300-01)

Coordinates

chr8:+:2305809..2308492

Molecular Weight (calculated)

25638.9 Da

IEP (calculated)

10.209

GRAVY (calculated)

-0.458

Length

233 amino acids

Sequence
(BLAST)

001: MPLWGTGSSA ASAAAEGSAA GGDGAARSSS GGAAVIRSLL PTRRRLRLDP PSKLFFPYEP GKQVRSAVKI KNISKSHVAF KFQTTAPKSC FMRPPGGILA
101: PGESIIATVF KFVEHPENNE KPLDQKCKVK FKIVSLKVKG PMEYVPELFD EQKNQVAVEQ ILRVVFLDAE RQTPQMDKLK RQLAEAEAAL EARKKPPEDT
201: GPRIVGEGLV IDEWKERRER YLARQQIEGV DSA

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.