Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76427 | Canola | nucleus | 98.91 | 96.45 |
| CDY47093 | Canola | nucleus | 98.91 | 95.44 |
| Bra013528.1-P | Field mustard | nucleus, plastid | 92.0 | 86.64 |
| AT4G21450.3 | Thale cress | nucleus | 90.91 | 79.62 |
| KRH21581 | Soybean | plastid | 50.18 | 74.19 |
| Solyc02g079230.2.1 | Tomato | nucleus, plastid | 70.91 | 73.03 |
| PGSC0003DMT400057560 | Potato | nucleus | 70.18 | 72.28 |
| TraesCS7A01G306700.2 | Wheat | cytosol | 60.0 | 72.05 |
| TraesCS7B01G207000.2 | Wheat | cytosol | 59.64 | 71.62 |
| VIT_00s0203g00040.t01 | Wine grape | nucleus | 68.36 | 71.21 |
| HORVU7Hr1G073060.2 | Barley | plastid | 58.55 | 70.31 |
| Zm00001d049598_P001 | Maize | plastid | 58.18 | 70.18 |
| Os08t0141300-01 | Rice | plasma membrane | 59.27 | 69.96 |
| KRH49936 | Soybean | nucleus | 68.36 | 69.89 |
| TraesCS7D01G303600.2 | Wheat | cytosol | 59.64 | 69.49 |
| Zm00001d024661_P001 | Maize | cytosol | 57.82 | 69.43 |
| EES13332 | Sorghum | plastid | 58.91 | 68.94 |
| KRH41939 | Soybean | nucleus | 66.91 | 68.66 |
| GSMUA_Achr3P22970_001 | Banana | nucleus | 64.0 | 67.43 |
| KRH10748 | Soybean | cytosol | 61.45 | 66.02 |
| GSMUA_Achr4P23830_001 | Banana | cytosol | 64.36 | 65.56 |
| GSMUA_Achr8P33100_001 | Banana | nucleus | 64.0 | 65.19 |
| Bra029550.1-P | Field mustard | plastid | 66.18 | 64.77 |
| HORVU2Hr1G041130.3 | Barley | nucleus | 62.91 | 63.37 |
| TraesCS2A01G206000.1 | Wheat | nucleus | 62.55 | 63.24 |
| TraesCS2B01G233200.1 | Wheat | nucleus | 62.55 | 63.24 |
| TraesCS2D01G210100.1 | Wheat | cytosol | 62.18 | 62.87 |
| Os07t0558800-01 | Rice | plasma membrane | 64.36 | 62.32 |
| Bra003015.1-P | Field mustard | cytosol | 54.55 | 62.24 |
| Zm00001d049833_P001 | Maize | plastid | 34.91 | 61.94 |
| EER97373 | Sorghum | nucleus | 62.18 | 61.73 |
| Bra022697.1-P | Field mustard | plastid | 57.82 | 60.23 |
| GSMUA_Achr11P... | Banana | cytosol | 47.27 | 45.45 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 23.64 | 42.21 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra020894 | EnsemblPlants:Bra020894.1 | EnsemblPlants:Bra020894.1-P | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 |
| InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:M4DWK0 | InterPro:MSP_dom | PFAM:PF00635 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF48 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | UniParc:UPI0002545A30 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
AT4G21450 (E=3e-118) | vesicle-associated membrane family protein / VAMP family protein
Coordinates
chrA08:-:11355262..11357259
Molecular Weight (calculated)
30581.3 Da
IEP (calculated)
9.806
GRAVY (calculated)
-0.773
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTEEKPASD GRGWGIFKIP FRNSHGNASS AATSPFPSGA SSSSSHLHHH HHGYNGPHGD GSGQNQHPTP SPSVSSVAKS LLPVKRRLKL DPSEKLYFPY
101: EPGKQVRSAI KIKNTSKSHV AFKFQTTEPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPVDQRSR VKFKIMSLKV KGPMDYVPEL FDEQKEDVSK
201: EQILRVIFLD PERPNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GVDSV
101: EPGKQVRSAI KIKNTSKSHV AFKFQTTEPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPVDQRSR VKFKIMSLKV KGPMDYVPEL FDEQKEDVSK
201: EQILRVIFLD PERPNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GVDSV
001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV
Arabidopsis Description
PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.