Factsheet for HORVU2Hr1G041130.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G233200.1	Wheat	nucleus	92.31	92.65
TraesCS2A01G206000.1	Wheat	nucleus	92.31	92.65
TraesCS2D01G210100.1	Wheat	cytosol	91.58	91.91
EER97373	Sorghum	nucleus	86.45	85.2
Os07t0558800-01	Rice	plasma membrane	83.15	79.93
HORVU7Hr1G073060.2	Barley	plastid	61.17	72.93
KRH21581	Soybean	plastid	48.35	70.97
GSMUA_Achr4P23830_001	Banana	cytosol	67.4	68.15
VIT_00s0203g00040.t01	Wine grape	nucleus	65.57	67.8
PGSC0003DMT400057560	Potato	nucleus	65.57	67.04
Solyc02g079230.2.1	Tomato	nucleus, plastid	65.57	67.04
KRH49936	Soybean	nucleus	63.37	64.31
KRH41939	Soybean	nucleus	62.27	63.43
Bra020894.1-P	Field mustard	nucleus	63.37	62.91
CDX76427	Canola	nucleus	64.84	62.77
CDX79064	Canola	nucleus, plastid	64.47	61.97
CDY47093	Canola	nucleus	64.47	61.75
CDY44751	Canola	nucleus	53.85	61.0
KRH10748	Soybean	cytosol	57.14	60.94
CDX82825	Canola	nucleus, plastid	64.84	60.82
Bra013528.1-P	Field mustard	nucleus, plastid	64.47	60.27
AT4G05060.1	Thale cress	nucleus, plastid	58.24	55.4
AT4G21450.3	Thale cress	nucleus	63.37	55.1
CDY71216	Canola	nucleus, plastid	56.04	54.45
Bra029550.1-P	Field mustard	plastid	54.95	53.38

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	EnsemblPlantsGene:HORVU2Hr1G041130	EnsemblPlants:HORVU2Hr1G041130.3
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0WU43	InterPro:MSP_dom	PFAM:PF00635
PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF56	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI0002958A19
InterPro:VAP	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:+:201757471..201762608

Molecular Weight (calculated)

29735.7 Da

IEP (calculated)

9.675

GRAVY (calculated)

-0.434

Length

273 amino acids

Sequence
(BLAST)

001: MAISGDERYA PAADSGGGKL WNLCRMPFRQ ASGAPAPASS SSSSGIHHSA GRYGVHEAPV AGDGGPPAAP AGISTVAKSL LPARRRLRLD PSNKLYFPYE
101: PGKQVKSAIR IKNTSKSHVA FKFQTTAPKS CFMRPPGAIL APGETIIATV FKFVEHPENN ENVLQKCKVK FKILSLKVKG PMEYAPELFD EQKDQAVVEK
201: ILRVVFLDVQ NPGPQLEKLN TQLAEAEAAL EARKKPPEEN GPKIVGEGLV IDEWKERRER YLAQQQVEAV DSV

Best Arabidopsis Sequence Match ( AT4G21450.1 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL FDEQKDDVSK EQILRVIFLD PERSNPALEK LKRQLAEADA AVEARKKPPE ETGPKMIGEG LVIDEWKERR ERYLAQQQGE GADSV

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.