Factsheet for GSMUA_Achr11P14640_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plasma membrane 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	58.44	31.47
GSMUA_Achr8P33100_001	Banana	nucleus	51.95	29.63
KRH41939	Soybean	nucleus	46.75	26.87
KRH49936	Soybean	nucleus	46.1	26.39
GSMUA_Achr3P22970_001	Banana	nucleus	44.16	26.05
PGSC0003DMT400057560	Potato	nucleus	44.81	25.84
Solyc02g079230.2.1	Tomato	nucleus, plastid	44.81	25.84
VIT_00s0203g00040.t01	Wine grape	nucleus	43.51	25.38
GSMUA_Achr4P23830_001	Banana	cytosol	43.51	24.81
TraesCS7B01G207000.2	Wheat	cytosol	36.36	24.45
TraesCS7A01G306700.2	Wheat	cytosol	35.71	24.02
CDY47093	Canola	nucleus	44.16	23.86
CDX76427	Canola	nucleus	43.51	23.76
TraesCS7D01G303600.2	Wheat	cytosol	36.36	23.73
Bra020894.1-P	Field mustard	nucleus	42.21	23.64
CDX79064	Canola	nucleus, plastid	43.51	23.59
CDY71216	Canola	nucleus, plastid	42.86	23.49
AT4G05060.1	Thale cress	nucleus, plastid	43.51	23.34
Bra013528.1-P	Field mustard	nucleus, plastid	43.51	22.95
Bra029550.1-P	Field mustard	plastid	41.56	22.78
HORVU7Hr1G073060.2	Barley	plastid	33.77	22.71
CDX82825	Canola	nucleus, plastid	42.86	22.68
Zm00001d049598_P001	Maize	plastid	33.12	22.37
Zm00001d024661_P001	Maize	cytosol	33.12	22.27
KRH10748	Soybean	cytosol	37.01	22.27
EES13332	Sorghum	plastid	33.77	22.13
Os08t0141300-01	Rice	plasma membrane	33.12	21.89
CDY44751	Canola	nucleus	33.77	21.58
AT4G21450.3	Thale cress	nucleus	42.86	21.02
KRH21581	Soybean	plastid	20.13	16.67
GSMUA_Achr11P...	Banana	nucleus, plastid, vacuole	7.14	7.75

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr11G14640_001	EnsemblPlants:GSMUA_Achr11P14640_001
EnsemblPlants:GSMUA_Achr11T14640_001	InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M0RS94	InterPro:MSP_dom
PFAM:PF00635	PFscan:PS50202	PANTHER:PTHR10809	PANTHER:PTHR10809:SF56	InterPro:PapD-like_sf	SUPFAM:SSF49354
TMHMM:TMhelix	UniParc:UPI0002948EC5	InterPro:VAP	SEG:seg	:	:

Description

MSP domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G14640_001]

Coordinates

chr11:-:16049372..16050919

Molecular Weight (calculated)

16552.7 Da

IEP (calculated)

11.120

GRAVY (calculated)

-0.292

Length

154 amino acids

Sequence
(BLAST)

001: MALAEVKAGT EGKGWGIFRL PFFGGGGGGG GGDGGSSSNS SSTFILTHNH HYRSSGQVEG GAAAAQAGRR SSGASSVSSV ARSLLPTRRR LRLDPPTKLY
101: FPYEPGKQVR SAIRIKNTSK SHVAFKVYNG LPFSMFLLLF LKYSWANFDY SKWI

Best Arabidopsis Sequence Match ( AT4G21450.2 )
(BLAST)

001: MTMTEEKPTS DGKGGWGFFK IPFRNSSGHR NAASSAATSP FPSGASSSST SSHLHNHHQH HHQHHHQHHH QLGYNGPHGD GSGQNQHPTP SPSVSSVAKS
101: FLPTKRRLKL DPSEKLYFPY EPGKQVRSAI KIKNTSKSHV AFKFQTTAPK SCFMRPPGAI LAPGETIIAT VFKFVEPPEN NEKPMDQRSR VKFKIMSLKV
201: KGPMDYVPEL VC

Arabidopsis Description

PapD-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JJI7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.